KEGG   Rattus norvegicus (rat): 312440
Entry
312440            CDS       T01003                                 
Symbol
Kdm3a
Name
(RefSeq) lysine-specific demethylase 3A isoform 2
  KO
K15601  [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04714  Thermogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    312440 (Kdm3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    312440 (Kdm3a)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.65  [histone H3]-dimethyl-L-lysine9 demethylase
     312440 (Kdm3a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    312440 (Kdm3a)
SSDB
Motif
Pfam: JmjC Cupin_2 zf-UDP C1_2
Other DBs
NCBI-GeneID: 312440
NCBI-ProteinID: NP_786940
RGD: 708351
Ensembl: ENSRNOG00000007814
UniProt: Q63679
Position
4:complement(105189208..105233526)
AA seq 1209 aa
MYKSLLDKAGLGSITSVRFLGDQQSVFVSKDLLKPIQDVNSLRLSLTDNQTVSKEFQALI
VKHLDESHLLQGDKNLVGSEVRIYSLDPSTQWFSATVVHGNPSSKTLQVNCEEIPALKIV
DPALIHVEVVHDNFVTCGNSTRIGAVKRKSSENNGSSVSKQAKSCSEVSPSMCPVQSVPT
TVCKEILLGCTAATPSSKGPRQQNTPQAANSPPNIGAKLPQGCHKQSLPEEISSCLNTKS
EVLRTKPDVCKAGLLSSKSSQVGAGDLKILSEPKGSCIQPKTNTDQESRLESTPQPVTGL
TKECLVTKTSSKAELDNATAPELQKRLEHTASTPDGLSDKPEVEAGVTRLNSCSEKKVGP
SDLGSQSQNLKETSVKVDHDSCCTRSSNKTQTPPARKSVLTDPDKLKKLQQSGEAFVQDD
SCVNIVAQLPKCRECRLDSLRKDKDQQKDSPVFCRFFHFRRLQFNKHGVLRVEGFLTPNK
YDSEAIGLWLPLTKNVVGTDLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQVAWKRA
VKGVREMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWIRCVKSQI
HEPENLMPTQIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPALKEDLKQAS
LSGEKPSLGTMVQQSSPVLEPAAVCGEAPSKPASNVKPICPANTSPLNWLADLTSGNVNK
ENKEKQLTMPILKNEIKCLPPLPPLNKSSTVLHTFNSTILTPVSNNNSGFLRNLLNSSTG
KTENGLKNTPKILDDIFASLVQNKTSSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCL
QDPNNKSNWNVFRECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQEVDLVNCRTNEI
ITGATVGDFWDGFEDVPNRLKNEKEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLP
EYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY
VGIPKGQCEQEEEVLRTIQDGDSDELTIKRFIEGKEKPGALWHIYAAKDTEKIREFLKKV
SEEQGQENPADHDPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVH
NLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNVIYHAVKDAVAMLK
ASESSLGKS
NT seq 3630 nt   +upstreamnt  +downstreamnt
atgtacaaatctctactagacaaagctggcttgggatccataacttctgttcgcttcctt
ggagatcagcaaagtgtatttgtttccaaagaccttttgaaacctatacaggatgtaaac
agtcttcggctttcccttactgataatcagacggtcagtaaagagtttcaagctttgatt
gtaaaacatttggatgaaagccatcttttacaaggtgacaagaaccttgttggttcagaa
gtaagaatttatagcttggatccatctactcagtggttttcagcaactgttgtacatgga
aacccctcatccaaaactcttcaagtcaactgtgaggagattccagcgctgaaaattgtt
gatccagcactgattcacgttgaagttgtacacgataattttgtaacgtgtggtaattct
acaagaattggagctgtgaaacgcaagtcttctgagaataatggaagttcagtttctaaa
caagcaaaatcttgctctgaggtctctcccagtatgtgtcctgtacagtctgttcccaca
acagtgtgtaaggagatcctgcttggctgtactgcagcaaccccatctagcaagggccca
agacagcagaacactccccaggcagccaattctccacctaacattggagcaaaacttcct
caaggatgtcacaagcagagtttaccagaagaaatttcttcctgtctaaatacaaaatct
gaagtactgagaacaaaaccagatgtttgcaaagcaggattactttcttcaaaatcttct
caggttggagctggagacttgaaaattctgagtgagcccaaaggtagctgtatccagcct
aaaacaaacactgatcaggagagcagactggagtctactccacaaccagtcactggcctt
acaaaggagtgcttggttacaaagacttcctctaaggcagaactggacaatgccactgct
cctgaactgcagaagcgtctagagcacacagcttccacacccgatggtctttcagacaag
ccagaagtggaagcaggtgtcactaggcttaatagctgttcagaaaagaaggttggacct
tcagatttaggttcgcagtcacagaatttaaaggaaacttcagtaaaagtcgatcatgac
agctgttgtacaagaagcagtaataaaacccagactcccccagcccggaagtcagttttg
acagacccagataaactcaagaagctacagcagagtggagaggcctttgttcaggatgac
tcctgtgttaacatcgtggcacagctgcccaagtgtcgggagtgtcgattagacagcctg
cgcaaggataaggaccagcagaaagactcgccagtgttctgtcgcttttttcacttcagg
aggttacaattcaacaaacatggtgttctgcgggtagaaggcttcttaacaccaaacaag
tacgacagtgaagcgattggcttgtggctgcctttgaccaaaaatgttgtggggactgat
ttggacacagcaaagtatatcctggccaatattggagaccacttctgtcaaatggtgatt
tctgagaaggaggctatgtcaactattgagccacacaggcaggttgcttggaaacgagct
gtcaaaggagttagagaaatgtgtgatgtgtgtgacacaaccattttcaacctgcactgg
gtgtgccctcggtgtgggtttggagtgtgtgtagattgctaccggatgaagaggaagaat
tgccaacagggggctgcctacaagactttctcttggataaggtgtgtgaagagtcaaata
catgagcctgagaacctgatgcccacgcagattattcctggcaaagccctctacgatgtt
ggagacattgtgcattctgtcagagcaaaatggggtataaaggccaattgtccctgctcc
aacaggcagttcaagctcttctcgaagccagccttaaaggaagacctgaagcaggcatcc
ttgtctggagaaaaaccaagtctcggcaccatggtacagcaaagctcccctgtgttggag
ccagcagccgtgtgtggggaagcaccctccaagccagccagcaatgtgaagcccatctgt
ccagccaacacatcccctttaaactggctagctgacctgaccagtggcaatgtcaacaag
gaaaacaaggaaaaacagctgactatgccaattttaaagaacgaaatcaaatgccttcca
cccttgcctcctctgaacaagtccagcactgtcctccatacttttaacagcacaattttg
acacccgtgagcaacaataattctggttttcttcgaaatcttttgaattcatccacagga
aagacagaaaatggactaaaaaacacacccaaaatccttgatgatatctttgcctctttg
gtacaaaacaagacttcttctgacttatccaagaggcctcaaggactgacgatcaagcct
agcattcttggttttgacactcctcactactggctgtgtgacaaccgcctgctgtgcttg
caagaccccaacaataagagcaattggaatgtctttagggaatgctggaaacaggggcag
ccagtgatggtgtcgggagtgcatcataaattaaacactgaactctggaaacccgagtcc
ttcaggaaagagtttggcgagcaagaagtagacctagtcaattgtaggaccaatgaaatc
atcacaggagccacagtgggagacttctgggatggatttgaagatgttccaaaccgtttg
aaaaacgaaaaagaaaaagaaccaatggtgttgaaacttaaggactggccgccaggagaa
gactttagagatatgatgccttccaggtttgatgatctgatggccaacattccactgcct
gagtataccaggcgagatggcaaactgaacctggcctctagactgccaaactactttgta
cggccagacctgggccccaagatgtacaatgcttatggattgatcactccagaagatcgg
aaatatgggaccacgaatcttcacttagatgtatctgatgcagccaatgtcatggtttat
gtgggaattcccaaaggacagtgtgaacaagaggaagaagtccttagaaccatccaagat
ggagattcggatgaactcacaatcaagcgatttattgaaggaaaagagaagccaggcgcc
ctttggcacatatatgctgctaaagacacagaaaagataagagaattccttaaaaaggta
tctgaagagcagggtcaagaaaaccccgcagaccatgatcctattcatgatcagagctgg
tatttagaccgatcactgagaaagcgcctttatcaagagtatggagttcaaggctgggct
attgtacaatttcttggcgatgtggtgtttatcccggcaggagctccacatcaggttcat
aacttatacagctgtatcaaagtcgctgaagacttcgtgtctccagagcatgtgaaacac
tgcttctggctcactcaggaattccgtcacttgtcacagactcataccaaccacgaagat
aaactgcaggtaaagaatgttatctaccatgcagtaaaagatgcagttgctatgctgaaa
gccagtgaatccagtttgggcaaatcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (10)   
   RefSeq(nuc) (4)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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