KEGG   Rattus norvegicus (rat): 312480
Entry
312480            CDS       T01003                                 
Symbol
Pcgf1
Name
(RefSeq) polycomb group RING finger protein 1
  KO
K11487  polycomb group RING finger protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03083  Polycomb repressive complex
rno04550  Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    312480 (Pcgf1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    312480 (Pcgf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    312480 (Pcgf1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     312480 (Pcgf1)
SSDB
Motif
Pfam: RAWUL zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-rbx1 zf-C3HC4_3 zf-RING_UBOX Rad60-SLD zf-RING_5 zf-Nse ATG8 Cobl zf-ANAPC11 TRAF3_RING zf-C3HC4_4 zf-RING_10
Other DBs
NCBI-GeneID: 312480
NCBI-ProteinID: NP_001007001
RGD: 1549782
Ensembl: ENSRNOG00000051433
UniProt: Q6DLV9
Position
4:117140144..117144729
AA seq 259 aa
MASPQGGQIAIAMRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTI
TECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEE
KRIREFYQSRGLDRVSQPSGEEPALSNLGLPFSSFDHSKAHYYRYDEQLSLCLERLSSGK
DKNKNVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQLWLSR
WFGKPSPLLLQYSVKEKRR
NT seq 780 nt   +upstreamnt  +downstreamnt
atggcgtctcctcaggggggccagattgcgatcgcgatgaggcttcggaaccagctccag
tcagtgtacaagatggacccactacggaacgaggaggaggtccgggtgaagatcaaagac
ctgaatgaacacatcgtttgctgcctatgcgcgggctacttcgtggacgccaccactatc
acagagtgcctccacaccttctgcaaaagttgtatcgtgaagtacctgcagaccagcaag
tactgccccatgtgtaacatcaagatccacgagacgcagccgttgctcaatctcaaactg
gatcgggtcatgcaggacatagtgtataagctagtaccaggcttgcaagacagtgaagag
aaacggattcgggaattctatcagtcccgaggcttggacagagtctcccagcccagtggt
gaagagccagccctgagcaaccttggcctccccttcagcagttttgaccactctaaagcc
cactattatcgatacgatgagcagctgagcctatgcctggagcggctgagttctggcaaa
gacaagaataaaaatgtccttcagaacaagtatgttcgatgttctgttagagctgaggtc
cgccatctccgaagggttctgtgtcaccgactaatgctaaatccacaacatgtacagctc
ctttttgacaatgaggttctccctgatcacatgacaatgaagcagctatggctttcccgc
tggttcggcaagccatctcctttgcttctacaatacagtgtgaaagagaagaggaggtag

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