KEGG   Rattus norvegicus (rat): 312510
Entry
312510            CDS       T01003                                 
Symbol
Tia1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1
  KO
K13201  nucleolysin TIA-1/TIAR
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    312510 (Tia1)
   03041 Spliceosome [BR:rno03041]
    312510 (Tia1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     312510 (Tia1)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    312510 (Tia1)
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7 Nup35_RRM Calcipressin Nup35_RRM_2 DbpA XOO_2897-deam
Other DBs
NCBI-GeneID: 312510
NCBI-ProteinID: NP_001012096
RGD: 1305742
Ensembl: ENSRNOG00000016813
UniProt: Q5PQR7
Position
4:120410180..120440676
AA seq 375 aa
MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR
ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS
TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY
SFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPAYGQWGQ
WYGNAQQIGQYVPNGWQVPAYGMYGQPWSQQGFNQTQSSAPWMGPNYSVPPPQGQNGGML
PNQPAGYRVAGYETQ
NT seq 1128 nt   +upstreamnt  +downstreamnt
atggaggacgagatgcccaagactctatacgtcggtaacctttctcgagatgtgacagaa
gctctcatcctccagctctttagccagatcggaccttgtaaaaactgcaaaatgattatg
gatacggcaggaaatgacccgtactgtttcgtggagttccatgagcatcgccacgcagct
gcagccctggctgctatgaatgggcggaagataatgggtaaggaagtgaaagtgaattgg
gcaacaacccctagcagtcaaaagaaagatacaagcaatcatttccatgtgtttgttggt
gacctcagtccagaaatcacaactgaagacatcaaagcagcttttgcaccatttggaaga
atttcagatgcccgtgtggtaaaagacatggctaccgggaagtctaagggatatggcttt
gtctcctttttcaacaaatgggatgcagaaaatgccattcagcagatgggtggccagtgg
cttggtggaagacaaatcagaactaactgggcaacccgaaagcctccagctccaaagagt
acatatgagtcaaacaccaaacagctgtcatacgatgaggttgtgagtcagtctagtccc
ggcaactgtaccgtgtactgtggaggagtgacgtcaggactgacagaacaactaatgcgt
cagactttttctccatttggacaaataatggaaatccgagtctttccagataaagggtac
tcattcattcggttcagttcccatgaaagtgcggcacatgcaattgtttctgttaacggt
actaccattgaagggcatgtggtgaaatgttactggggcaaagagactcttgacatgata
aaccccgtgcagcagcaaaatcaaattggatatccaccagcatatggccagtggggccag
tggtatggaaatgcacaacagattggccagtatgtacctaatggttggcaagtacctgcc
tatggaatgtatggccagccatggagccagcagggattcaatcagacccagtcttctgca
ccatggatgggacccaattacagtgtgccgccacctcaagggcagaacggcggcatgctg
cctaatcagcctgctgggtatcgagtggcagggtatgaaacccagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (14)   
   UniProt (1)   
   RefSeq(pep) (13)   
DNA sequence (21)   
   RefSeq(nuc) (19)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (53)   

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