KEGG   Rattus norvegicus (rat): 312560
Entry
312560            CDS       T01003                                 
Symbol
Xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    312560 (Xpc)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    312560 (Xpc)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      312560 (Xpc)
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 pAdhesive_10
Other DBs
NCBI-GeneID: 312560
NCBI-ProteinID: NP_001101344
RGD: 1305760
Ensembl: ENSRNOG00000008274
UniProt: A6IBA2
Position
4:complement(125550833..125578084)
AA seq 933 aa
MARKRTAGGKRRKRGQEAEDNKATRPEESDADDFEDEKQKPPRKCFLPKVSQGKRKRDCS
DPGDPTNGAAKKKVAKATTKSKNLKAVKEEALSDDGDDFRDSLSNCRKAKKHPKREVVDQ
GTDEDDSEDDWEEVEELTEPVLDMGENSATSRSDLPVKAVEIEIETPEQAKARERSEKIK
MEFETYLRRMMKRFNKEVQENMHKVHLLCLLASGFYRNSICQQPDLLAIGLSIIPIRFTK
VPLQDRDVYYLSNLVKWFIGTFTVNADLSASEQDSLQTTLERRIAIYSARDNEELVHIFL
LILRALQLLTRLVLSLQPIPLKSAVAKGKKSSKETSLEGPGDSSEPSSNIPESHNKPKTS
KRIKQEETLSEGSGKANARGKRGTATAGSRQQRKPSCSEGEEAKQEIQSHPQAQKRRVAA
KVSYKEESESDGAGSGSDFELSSGEGQHSSDEDCKPGPRKQKRASAPQRSKAGSKSASKT
QSGSQWEPPSFSVASSSSSACKRGKKISCGGEETDDRKAAGVDQWLEVFCEPQAKWVCVD
CVHGVVGQPVACYKYATKPMTYVVGIDSDGWVRDVTQRYDPAWMTATRKCRVDAEWWAET
LRPYRSPLTEREKKEDQEFQAKHLDQPLPTSISTYKNHPLYALKRHLLKFQAIYPESAAV
LGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKMVKGFSNRARKARLSEPQLHD
HNDLGLFGHWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQMNLPNLHRVARKL
GIDCVQAITGFDFHGGYCHPVTDGYVVCEEFRDVLLAAWENEQALIEKKEKEKKEKRALG
NWKLLVRGLLIRERLKLRYGAKSEAAAPHANAGGGLSSDEEEGTSSQAEAARVLAASWPQ
NRETKEEQKPDYTKMTRRRRAAEASHLFPFEKL
NT seq 2802 nt   +upstreamnt  +downstreamnt
atggcccgaaagcgtaccgcaggcggaaagcggaggaagcgcggccaggaagccgaggac
aacaaagcaacccggcctgaggagagcgatgcggacgactttgaagatgagaaacagaaa
cccccaaggaagtgctttctcccgaaagtttcccaaggaaagaggaagagagactgcagt
gatccaggggaccccacaaatggtgcagcaaaaaagaaagtggccaaagccaccactaag
tccaagaatctcaaggctgtgaaggaggaagcactcagcgacgacggggatgatttccgg
gactcattgagtaactgcagaaaggcaaagaaacatcccaaaagagaggtggtggaccaa
ggcaccgatgaagatgacagcgaggatgactgggaggaggtggaagaacttactgagcct
gtgctggacatgggagaaaattctgctacctcgcggtctgacctgcctgtgaaggcagtg
gagatagaaattgaaacaccagagcaggcgaaggcacgggaaagaagtgagaagataaag
atggagtttgagacatacctgcggaggatgatgaagcgtttcaataaggaagtgcaggag
aacatgcacaaggttcacttgctgtgcctgctggccagtggcttctatcgaaatagcatc
tgccagcagccagatctgctggccatcggcctctccatcatccctattcgctttaccaaa
gtgccacttcaagaccgggatgtctactacctttcaaacctggtaaagtggttcattgga
accttcactgtcaatgctgacctttcagccagtgagcaggacagcctgcagacgaccttg
gaaaggaggatcgccatttactctgcgagggataatgaagagttggtccatatatttctt
ctgattcttcgggctctgcagctgctcacccggctggtcttgtctctgcagcccattcca
ctgaagtcagctgtggcaaaggggaagaaatcttccaaggagacatctttagagggtcct
ggagactcttcagaaccttctagtaacattccagaaagccacaacaaacccaagaccagc
aaaagaatcaaacaagaagaaaccttgtctgaaggcagtggcaaggcaaatgccagagga
aagagaggcactgccaccgctggcagcaggcagcagaggaagccctcctgcagcgaggga
gaggaggccaagcaggaaatccagagccatccacaggcccagaagcggcgtgtggctgcc
aaggtgtcttacaaagaggagagtgagagtgatggggcaggcagtggctctgactttgaa
ctgtccagtggggagggccagcattcctctgatgaggattgtaagcctggccctcgaaag
cagaagagggcctcagctcctcagaggtcaaaggctggttctaagagtgcttccaagacc
caaagtgggagccaatgggagccaccaagcttttcagtggcatcttcaagctcttcagcc
tgcaagcgaggcaagaagatttcctgtggtggtgaagagacagatgataggaaagctgct
ggtgtagaccagtggctcgaggtgttctgtgagccacaggcaaagtgggtgtgtgtggac
tgtgtgcatggtgtggtgggccagcctgtggcctgttacaaatatgccaccaaacccatg
acctatgttgtaggcattgacagtgatggctgggtccgagatgtcactcagaggtatgac
ccagcctggatgacagcaacccgcaagtgccgggttgacgctgagtggtgggctgagact
ttgaggccctatcggagcccacttaccgagagggagaagaaggaagaccaggagtttcag
gcaaagcacctggaccagcctttgcccacctccatcagcacatacaagaaccaccctctg
tatgccctgaagcgccacctcttgaaattccaggctatttaccctgagtcagctgcggtc
cttgggtattgtcgtggagaagctgtctattccagggattgtgtgcataccttgcactcc
agggacacgtggctgaagcaagcaagagtggtgcggcttggagaagtgccctataagatg
gtgaaaggtttctctaaccgtgcccggaaagcccggctttcggagccccagctgcatgac
cacaatgacttgggcctctttggtcactggcagacagaagagtatcaacctcctgtggct
gtagacgggaaggtgccccggaatgagtttgggaacgtgtacctcttcctgcccagcatg
atgcctatcggctgtgtccagatgaacctacccaacctgcaccgcgtggcccgcaagctg
ggcatcgactgcgtgcaggccatcactggcttcgatttccatggaggctattgccaccca
gtaactgatggctacgttgtctgtgaggaattcagagatgtgctgctggctgcttgggag
aatgaacaggccctcattgaaaagaaggaaaaggagaaaaaggaaaagcgggcactgggg
aactggaagctgctggtcagaggactgctcatcagagaaaggctgaaactccgctacggg
gccaagagtgaggcagcagctccccatgcaaatgcaggaggcggactctcttctgatgaa
gaggaagggaccagttcacaagcagaagctgccagagttctggctgcttcctggccacag
aaccgagagactaaagaagaacagaagcccgactacacgaagatgactcggagaaggcgg
gcagcagaggcttcccatctcttcccatttgagaagctatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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