KEGG   Rattus norvegicus (rat): 312678
Entry
312678            CDS       T01003                                 
Symbol
Kdm5a
Name
(RefSeq) lysine-specific demethylase 5A isoform 1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    312678 (Kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    312678 (Kdm5a)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     312678 (Kdm5a)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     312678 (Kdm5a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    312678 (Kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_5 PHD_4 PHD_2 FRG1 ASH2L-like_WH zf-PHD-like
Other DBs
NCBI-GeneID: 312678
NCBI-ProteinID: NP_001264106
RGD: 1305429
Ensembl: ENSRNOG00000010591
Vega: OTTRNOG00000001225
Position
4:155238124..155316121
AA seq 1690 aa
MAGVGPGGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPP
FACEVKTFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYAL
SKIVASKGGFEIVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGVSLMG
VQMPDLDLKEKVEAEVLSTDIQPSPERGTRMNIPPKRTRRVKSQSDSGEVNRNTELKKLQ
IFGAGPKVVGLAVGAKDKEDEVTRRRKVTNRSDAFNMQMRQRKGTLSVNFVDLYVCMFCG
RGNNEDKLLLCDGCDDSYHTFCLLPPLPDVPKGDWRCPKCVAEECNKPREAFGFEQAIRE
YTLQSFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGS
GFPIKDGQRKMLPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFSSF
CWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVTIM
NPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVN
HYRRLRRHCVFSHEELIFKMAADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVVM
SEEEVFELVPDDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCSCPMQNKCLRYRY
PLEDLPSLLYGVKVRAQSYDTWVNRVTEALSASFNHKKDLIELRVMLEDAEDRKYPENDL
FRKLRDAVKEAETCGSVAQLLLSKKQKHRQSSDSGKTRTKLTVEELKAFVQQLVSLPCVI
SQTRQVKNLLDDVEEFHERAQEAMMDETPDSSKLQVLIDMGSSLYVELPELPRLKQELQQ
ARWLDEVRLTLSDPQQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAK
VCLQARPRHSMANLENIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYL
EQLESLSAKGRPIPVRLDALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPRTDI
GVYGSGKNRRKKVKEIIEKEKEKDLDLEPLSDLEEGLEETRDAAMVVAVFKEREQKEIEA
MHSLRAANLAKMTIVDRIEEVKFCICRKTASGFMLQCELCKDWFHNGCVPLPKSGSQKKG
SSWQAKDVKFLCPLCMRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMSWQDRA
RQALATDELSSALAKLSVLSQRMVEQAAREKTEKIISAELQKAAANPDLQGHLPSFQQSA
FNRVVSSVSSSPHQAMDYDDEETDSDEDIRETYGYDMKDTASVKSSSSLEPNLFCDEEIP
IKSEEVVTHMWTAPSFCAEHAYSSASKSCSQGSSTPRKQPRKSPLVPRSLEPPVLELSPG
AKAQLEELMMVGDLLEVSLDETQHIWRILQATHPPSEDRFLHIMEDDSVEEKPLKMKGKD
SSEKKRKRKLEKVEQFFGEGKQKTKELKKIDKPKKKKLKLNVDKSKELNKLAKKLAKEEE
RKKKKEKAAAAKVELAKESTEKKRERKVLDIPSKYDWSGAEESDDENAVCAAQNCQRPCK
DKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCAKKQGPDSPGHAPPPPFIMSYK
LPMEDLKETS
NT seq 5073 nt   +upstreamnt  +downstreamnt
atggcgggcgtgggcccggggggctacgcggcggagttcgtgccgccgcccgagtgcccg
gtctttgagcccagttgggaggagttcacagacccgctaagttttatcggtcgcatccgg
cctctggctgagaaaactggcatctgcaaaatccgtccacccaaggattggcaacctcca
tttgcttgtgaagtaaaaaccttccgattcactcccagagtccagcgcctgaatgaactt
gaggcaatgactagagtaagattggacttcttggatcaactggcaaaattttgggaactt
caaggatctacattgaagattcccgtggtggagagaaaaatcctggatttgtatgcttta
agcaagattgttgccagcaaaggaggttttgaaatagtcaccaaagagaagaaatggtct
aaagtgggtagccgtttgggatatctgccaggaaaaggaactgggtctcttttgaagtca
cactatgaaagaattctctacccatatgagcttttccaatctggtgtcagccttatgggt
gtacaaatgcctgatttagatcttaaggaaaaagttgaagctgaggttctcagtactgac
atccagccttccccagagcggggaacaagaatgaatatcccaccaaagagaacaagacga
gttaaatcccagtcagactctggagaagtaaatagaaatacagaactgaagaaacttcag
atttttggggctggacccaaagtagtaggcctggcagtaggagcaaaagataaagaagat
gaggtcacccgaagacggaaagttaccaacaggtcagatgcatttaacatgcagatgaga
caacggaaaggaactctctctgttaactttgtcgatctctatgtttgcatgttttgtggt
cgaggaaacaatgaggataaactgcttttgtgtgacgggtgtgatgacagctaccataca
ttttgtctgcttccaccacttcctgatgtgcccaaaggagactggaggtgtcctaaatgt
gttgctgaggaatgtaacaaacctcgagaagcctttggatttgagcaagctataagagaa
tatacacttcaaagcttcggagagatggcagataattttaagtctgattatttcaatatg
ccagtgcatatggttcctacagagctagtagaaaaggagttctggcggctagtaagtagt
attgaagaagacgtcattgtagagtatggagctgatatctcttcaaaagattttggaagt
ggatttcctataaaggatggtcagagaaagatgttaccagaagaggaggagtatgcactt
tctggttggaatttgaataacatgcctgttctggagcagtctgttcttgctcatattaat
gtggacatttctggtatgaaggtgccgtggctctatgtgggaatgtgcttttcttctttt
tgctggcatattgaagatcactggagttattcaattaactacttgcattggggcgagcca
aagacatggtatggtgtaccatctcatgctgcagaacaactggaggaggtgatgagggag
ctggcccctgagttatttgaatcacagcctgacctcctacatcagttagtaaccatcatg
aacccaaatgtgctcatggagcatggtgtgcctgtgtacagaactaatcagtgtgctgga
gagtttgtggtgacgtttcctcgtgcctatcactctggatttaaccagggatacaacttt
gctgaagccgtgaacttctgtactgctgactggttgcccattggacgtcagtgtgtaaat
cactatcgacggctgaggcgccattgtgtcttttcacatgaggaactcattttcaagatg
gcagcagatccagaatgcttagatgtggggctggctgccatggtatgcaaagagttgact
ctcatgactgaagaagaaacacgattgagggaatcggttgttcaaatgggtgtcgtgatg
tcagaagaagaagtcttcgaacttgttcctgatgatgagcggcagtgttcagcatgcaga
accacatgttttctctcagctctcacatgctcctgtaatccagagcgacttgtatgtttg
tatcatccaactgatttgtgctcctgccccatgcagaacaaatgtcttaggtaccgatac
ccacttgaagacctcccatctctgctttatggtgtcaaagtgagagcacagtcctatgac
acttgggtcaatcgtgtcacagaagcattatcagctagcttcaaccataagaaagatttg
attgaattgagagtaatgctggaagatgctgaggataggaaatacccagagaatgatctc
tttcgaaagctcagggatgcggtaaaagaagctgagacctgtggttctgtggctcagctg
cttctgagcaaaaaacaaaaacacaggcagagctcagatagtgggaagactcggaccaaa
ctgacagtagaagaattgaaggcctttgtccaacaacttgttagtcttccgtgtgtcatc
agccaaactcgacaagtaaagaatctgctggatgatgtagaagaatttcatgaacgtgcc
caggaggccatgatggatgaaactccagattcttccaaactccaagtgttaatagacatg
ggctctagtctctatgtggaactacctgaattgccccgactaaagcaagagctacagcag
gctcggtggctggatgaagtaagactgactctatcagacccacaacaagtcactttggat
gtcatgaagaaattgattgactctggggtaggcttggcacctcaccatgctgtggaaaag
gcaatggctgaactacaggaacttcttacagtctctgaacgatgggaagagaaggcgaag
gtctgcctgcaggcaagaccacggcacagtatggcaaatttagaaaatattgtaaatgaa
gccaagaacattccagcctttctacccaatgtgttgtccttaaaagaagccttacaaaag
gctcgtgaatggacagctaaagtggaagctattcagagcggcagcaactatgcttacttg
gaacagcttgagagcttgtctgctaaaggacgccctatccctgtgcgcctcgatgccttg
cctcaagtggagtcacaagtagcagcagcgcgagcctggagggagcggacggggcggacc
ttccttaagaagaattccagccatacattgttacaggtgctaagtccacgaacagacatt
ggtgtatatggcagtggcaaaaacagaaggaaaaaagtaaaagaaataatagaaaaagaa
aaggagaaggacctagaccttgaacctttgagtgacttagaagaaggactggaggagacg
agggacgcagccatggtggtggcagttttcaaagaacgagaacaaaaggagattgaagcc
atgcattccctcagagcagccaacctagccaagatgaccattgtggaccgcatagaagaa
gtaaagttttgtatttgccgcaagacagcgagtgggtttatgctacagtgtgagctctgc
aaagactggttccataatggctgtgttccccttcctaagtcaggttcccagaaaaaggga
tccagctggcaagccaaagacgtaaaattcctttgccctctctgcatgagatcccggagg
ccgaggctagagactattctgtcactcctggtatcccttcagaagttgcctgtacgattg
cctgaaggagaagcactgcagtgtttgacagagcgtgctatgagttggcaagatagagca
cgacaagctttagccacagatgaactgtcttctgccctggccaaactctctgtgttaagc
cagcgtatggtagaacaagcagcccgagaaaaaactgaaaagattatcagtgcagaactc
cagaaagcagccgccaatccagacttacagggacacttacctagtttccagcagtctgct
tttaaccgggtggtgagcagtgtatcctcttccccccaccaagcgatggactatgatgat
gaagaaacagactctgatgaagatattcgagagacatatggctatgacatgaaggataca
gccagtgtaaagtcctctagcagtctggaacccaatctcttttgcgatgaagagattcct
atcaaatcggaggaagtggtgacccacatgtggacagcaccttcattctgtgcagagcat
gcatattcttctgcttctaagagttgttctcaaggttctagcactccaagaaagcagcct
cggaagagccctttggttcccagaagtttggagcctccagtattagaattgtctcctgga
gcaaaagcccagttggaagaactcatgatggttggagacctcctagaagtgtctctggat
gagacacaacacatatggcggattttgcaggccacacatccaccctcagaggacagattc
ttacatatcatggaggatgatagcgtagaagagaaaccattaaaaatgaaaggaaaggat
tcttcagagaagaaacggaagcggaaattagaaaaggtagaacagttttttggagaagga
aaacagaagaccaaggagctaaagaaaatagataaacctaaaaagaagaaattaaaatta
aatgtggacaaatcaaaagagctgaataaattggctaagaagttagcaaaagaagaagag
cgaaagaaaaagaaagaaaaggctgctgcagccaaagtggagcttgcgaaagagagcacc
gagaagaaaagagagagaaaggtgctggatatcccttcaaagtatgactggtcgggcgca
gaggagtctgatgatgagaatgctgtatgtgcagcacagaactgccaaaggccgtgtaag
gacaaggtagactgggtacaatgtgatggtggctgtgatgagtggtttcatcaagtttgt
gttggtgtatccccagaaatggctgaaaatgaagattacatctgtataaactgtgcaaag
aagcaggggccagatagcccaggccacgcaccacctcctcccttcataatgagctacaaa
ctaccaatggaggatcttaaagagaccagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (13)   
   Pfam (13)   
All databases (50)   

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