KEGG   Rattus norvegicus (rat): 312936
Entry
312936            CDS       T01003                                 
Symbol
Sox17
Name
(RefSeq) transcription factor SOX-17
  KO
K04495  transcription factor SOX17 (SOX group F)
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04310  Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    312936 (Sox17)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    312936 (Sox17)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    312936 (Sox17)
SSDB
Motif
Pfam: HMG_box Sox17_18_mid HMG_box_2 HTH_24
Other DBs
NCBI-GeneID: 312936
NCBI-ProteinID: NP_001101372
RGD: 1305371
Ensembl: ENSRNOG00000027357
UniProt: A6JFJ9 G3V923
Position
5:19814345..19819859
AA seq 423 aa
MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSSLGDVKVKGEVVASSGAPAGTSS
RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALAEPQAGALGPEGGRVAMDGLG
LPFPEPGYPAGPPLMSPHMGAHYRDCQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAP
LPGDCPAAGAYTYAQVSDYAVPAEPSAGPMRVGPDPSGSAMPGILAPPSALHLYYGAMGS
PAASAGRGFHAQPQQPLQPQPPPPPPPPPPPQQHPTHGPGQPSPPPEALPCRDGTEPNQP
TELLGEVDRTEFEQYLHFVYKPEMGLPYQGHDCGVNLSDSHGAISSVVSDASSAVYYCNY
PDI
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgagcagcccggatgcgggatacgccagtgacgaccagagccagcctcggagcgcgcag
cccgcggtgatggccgggttgggcccctgtccctgggccgagtccctgagctctctcggg
gacgtaaaggtgaaaggagaggtggtggcgagtagcggggcgccagccgggacctcgagt
cgagccaaagccgagtctcgcatccggcggccgatgaatgcctttatggtgtgggccaaa
gacgaacgcaagcggctggcacagcagaacccggatctgcacaacgcagagctgagcaag
atgctaggcaaatcctggaaggcgttgaccttggcggagaagcggcccttcgtggaagag
gccgagcggctgcgtgtgcagcacatgcaggaccatcccaactacaagtaccggccgcgg
cggcgcaagcaggtgaagcgcatgaaacgggtggagggaggcttcctgcacgctctcgcc
gagcctcaggccggcgcgcttggtcccgagggcggccgcgtggccatggatggcctgggt
ctgcctttcccggagccaggctatccggccggcccgccgctgatgtccccgcacatgggc
gcccactaccgtgactgccagggactgggcgcacccgcgctcgacggctaccctctgccc
actccggacacatccccgttggatggcgtggagcaggacccggctttctttgctgccccg
ctgccaggggactgcccggcggccggagcctacacgtatgctcaggtctcggactatgcg
gtgcccgcagagccgtccgctggccccatgcgagtgggacccgacccctccggctctgcg
atgccggggatcctggcgccccccagtgctctgcacctgtactacggcgcgatgggctcg
cccgcggcaagcgccgggcgcggtttccacgctcagccccagcagccactgcaaccgcag
ccaccgccgccaccaccaccgcctccaccgccgcagcagcacccgacgcacggtccgggg
cagccttctccacctcccgaggctctgccctgccgggatggcacggaacccaaccagccc
actgagctactaggggaggtggaccgcacggaattcgaacagtatttgcactttgtgtat
aagccggagatgggtcttccctaccagggacacgactgcggtgtgaacctctcggacagc
cacggagccatttcctccgtggtgtccgacgctagctcagcggtctactactgcaactac
cctgacatctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (2)   
   RefSeq(pep) (8)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (34)   

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