KEGG   Rattus norvegicus (rat): 313047
Entry
313047            CDS       T01003                                 
Symbol
Yars1
Name
(RefSeq) tyrosine--tRNA ligase, cytoplasmic
  KO
K01866  tyrosyl-tRNA synthetase [EC:6.1.1.1]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    313047 (Yars1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:rno01007]
    313047 (Yars1)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    313047 (Yars1)
   03029 Mitochondrial biogenesis [BR:rno03029]
    313047 (Yars1)
Enzymes [BR:rno01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.1  tyrosine---tRNA ligase
     313047 (Yars1)
Amino acid related enzymes [BR:rno01007]
 Aminoacyl-tRNA synthetase
  Class I (A)
   313047 (Yars1)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    313047 (Yars1)
 Prokaryotic type
    313047 (Yars1)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    313047 (Yars1)
SSDB
Motif
Pfam: tRNA-synt_1b tRNA_bind
Other DBs
NCBI-GeneID: 313047
NCBI-ProteinID: NP_001020867
RGD: 1307616
Ensembl: ENSRNOG00000007213
UniProt: Q4KM49 A6ISH9
Position
5:146820163..146848377
AA seq 564 aa
MQPDGTSVTVPGTRRRRRTRKGRGCRLSAGNRESGAMGDAPSPEEKLHLITRNLQEVLGE
EKLKEILKERELKVYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMK
APWELLELRTSYYENVIKAMLESIGVPLEKLKFTKGTDYQLSKEYTLDVYRLSSLVTQHD
AKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPTLGY
SKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFV
KHVLFPLKSEFVILRDEKWGGNKTYTIYQELEKDFAAEVVHPGDLKNSVEVALNKLLDPI
REKFNTPALKKLASAAYPDPSKQKPTAKGPAKSSEPEEIIPSRLDIRVGKILSVEKHPDA
DSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCAS
VEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQ
WKQTNFMTKLGFVSCKSLKGGNIS
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgcaacctgacgggactagcgtgacagttcccggcacgcggagacggcggcgaacgagg
aaagggcgcgggtgccggctgagcgcgggaaaccgagagagcggagccatgggggatgct
ccaagccctgaggagaagctacaccttatcacccggaacctgcaggaggttctgggggaa
gagaagctgaaggagatactgaaggagcgggaacttaaagtttactggggcacggctacc
accgggaagccacacgtggcctactttgtacccatgtccaagattgctgacttcttgaag
gcagggtgtgaggtaaccatcctgtttgcagaccttcatgcatacctggacaacatgaaa
gctccctgggaacttctagaacttcgaaccagttactacgaaaatgtgatcaaggcaatg
ctggagagtattggtgtgcccttggagaagctcaagtttaccaaaggcaccgactaccag
ctcagcaaagagtacacactggatgtgtaccggctgtcctccctggtcacacaacatgat
gccaagaaagccggggctgaggtcgtaaagcaggtggagcaccctttgctgagtggtctg
ttgtatcccggtctgcaggccttagacgaagagtacttaaaagtagatgcccagtttggc
ggtattgatcagaggaagatttttacctttgcagagaagtatctccccacacttggctac
tcaaaacgggtccatctgatgaaccccatggttcctgggttaactgggagcaaaatgagc
tcatcagaagaggagtccaaaatcgacctccttgatcggaaggaggatgtgaagaaaaag
ctgaagaaggccttctgtgagcccggcaacgtggagaacaatggggtgctgtccttcgtc
aagcacgtcctctttcctctcaagtctgagtttgtgatcctgagagatgagaagtggggt
ggaaacaaaacctacaccatttaccaggagctggaaaaggactttgctgctgaggttgta
caccctggagacctaaagaattctgttgaagtcgccctgaacaagttgctggaccccatt
cgagaaaagtttaataccccagccctgaagaagctggccagtgctgcctaccctgatcct
tcaaagcagaagcctactgccaaaggccctgccaagagttcagaaccagaggagatcatc
ccatcccggctggacatccgtgtgggcaaaatcctcagcgtggaaaagcacccagatgca
gatagcctgtatgtggagaagattgatgtgggggaagccgaacccaggactgtggtgagc
ggcctcgtgcagtttgtgcccaaagaagaactacaggaccgactggtggtggtgctgtgc
aacctgaaaccccagaagatgagaggagtggactcccagggcatgctactgtgtgcttct
gtagaaggggtaagccgccaggtggaacctctggaccctcctgcaggctctgcccctggt
gaacgggtatttgtacagggctatgagaagggccaacctgacgaggagctcaagcccaag
aagaaagtctttgagaagctgcaggccgactttaagatttctgatgactgcgtcgcacag
tggaagcaaaccaacttcatgaccaagctgggctttgtctcctgtaaatcactaaaaggg
ggcaacatcagctag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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