KEGG   Rattus norvegicus (rat): 313308
Entry
313308            CDS       T01003                                 
Symbol
Thoc2
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    313308 (Thoc2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    313308 (Thoc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    313308 (Thoc2)
   03041 Spliceosome [BR:rno03041]
    313308 (Thoc2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     313308 (Thoc2)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   EJC/TREX
    313308 (Thoc2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    313308 (Thoc2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 313308
NCBI-ProteinID: NP_001178685
RGD: 1561623
Ensembl: ENSRNOG00000007315
Position
X:complement(125500549..125615139)
AA seq 1594 aa
MAAATVVVPAEWIKNWEKSGRGDFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASSVLNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGTITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEYK
REIVEAKQIVRKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQ
VESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVVSLHVAKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVNKICQEEKEKRPDLYALAMGYSGQLKSRKSHMIPENEFHHKDPPPRNAVASV
QNGPGGGTSSSSIGSASKSDESGAEETDKSRERSQCGTKAVNKASSTTPKGNSSNGNSGS
NSNKAVKENDKEKVKEKEKEKKEKTPATTPEARVLGKESKEKPKEERPNKDDKARETKER
TPKSDKEKEKFKKEEKAKDEKFKTTVPSVESKSTQEREREKEPSRERDVAKEMKSKENVK
GGEKPPVSGSLKSPVPRSDISEPDREQKRRKIDTHPSPSHSSTVKDSLIDLKDSSAKLYI
NHNPPPLSKSKEREMDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDITKRR
KEENGTMGVSKHKSESPCESQYPNEKDKEKNKSKSSGKEKGSSDSFKSEKMDKISSGGKK
ESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
NT seq 4785 nt   +upstreamnt  +downstreamnt
atggcggccgcgactgtggtggttcccgcagagtggataaagaactgggagaaatcaggg
agaggcgattttttgcatttatgccggattctcagtgaaaacaaaagccatgacagttcg
acctacagagattttcagcaagctctctatgagttgtcataccatgtcattaagggaaat
ttaaagcacgaacaggcatccagtgttcttaatgacattagtgaattccgtgaggatatg
ccttctatccttgctgacgtgttctgcatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctgaaggaacgattggatccagaaactttggaatctttagggcttatcaaacaa
tcacagcagttcaaccaaaagtcagttaaaatcaagacaaaactcttttataagcagcaa
aaattcaatttattaagagaagaaaatgaaggttatgccaagctgattgctgaactgggg
caagatttatctggaactattactagtgatttaatattagaaaatatcaaatctttaata
ggatgctttaatctggatcccaatagagttttggatgtcattttagaagtatttgaatgc
aggccagaacatgatgacttctttatatcgttattagagtcttacatgagtatgtgtgaa
ccacaaacactgtgtcatattcttggattcaaattcaagttttatcaggaaccaagtggt
gagacgccctcgtctttgtacagagttgcagcagtccttctgcaatttaatctcattgat
ctagatgatctttatgtacatctcctcccagctgataattgtattatggatgaatacaaa
cgagaaattgtggaagctaagcaaattgtaagaaaactcacaatggttgtactgtcttct
gaaaaacttgatgaacgagacaaagaaaaggataaagatgacgagaaagtagaaaagcca
cctgacaaccaaaaacttggtttgttggaagctttgttaaagattggtgattggcagcat
gcacagaacatcatggatcagatgcctccgtactatgcagcttcacataagctaatagct
cttgctatttgcaagctcattcacataactgtcgagcctctctaccgaagagttggtgtt
cctaaaggtgctaaaggctcacccgttagtgctttgcaaaataagagagcaccgaagcaa
gtagagagctttgaagatttgaggagggatgtattcaatatgttctgctaccttggtcct
cacctctcacatgatcccattttatttgcaaaagtcgtgcgcataggcaagtcatttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagagaaaacggaagttatcctt
agctgtttacttagcattactgaccaggtattacttccatctctctctttgatggactgc
aatgcttgcatgtctgaggaactgtggggaatgttcaagacatttccctatcagcataga
tatcgtctatatggccagtggaagaatgaaacttataatgggcacccacttttagtaaaa
gttaaagctcaaacaatagaccgagccaagtatatcatgaagcgtctaaccaaggaaaat
gtgaagccttcgggaagacaaattggcaagctgagccatagtaatccaacaattttgttt
gattatatcttgtcacaaatccagaaatatgataacttaataacacctgtagtagattca
ttgaaatacctcacttcattgaattatgatgtcttggcctattgtatcattgaagcttta
gctaatccagaaaaggagagaatgaaacatgatgacacaaccatctcaagctggcttcaa
agtctggcaagtttctgtggtgcagtattccgtaaatacccaatcgatcttgctggtctt
cttcagtatgtagccaatcaattaaaggcaggcaaaagttttgacctactaatattgaaa
gaagtggtacaaaaaatggcaggaatcgaaattacagaggagatgacgatggagcagtta
gaggccatgactggtggggagcagctgaaggctgagggtggttatttcggccagatcaga
aacactaaaaaatcttctcagagattaaaggatgcactactggaccatgatcttgctctt
cctctctgtttgctcatggcacaacagaggaatggggtaatttttcaggagggtggagag
aaacacttgaaacttgtggggaagctctatgaccagtgtcatgataccctagtacagttt
ggtgggtttttagcatcaaatctaagtacagaagattatataaaacgagtgccttcaatt
gatgtgctctgtaatgaatttcatacacctcacgatgcagcattttttctgtctaggcca
atgtatgcacaccatatttcatcaaaatacgatgaacttaaaaaatcagaaaagggaagt
aaacagcaacataaagtccataaatacattacatcatgtgaaatggtgatggcacctgtc
catgaagcagtggtctccttgcatgttgccaaagtctgggatgatatcagccctcagttc
tatgctacattttggtcgttgacaatgtatgaccttgcagttccacataccagctatgaa
agagaagtcaataaacttaaagtccagatgaaagcgattgatgacaatcaggaaatgcct
ccaaataaaaagaagaaagaaaaggagcgttgcacggcccttcaggacaagctccttgaa
gaagaaaagaagcagatggaacatgttcagagagtacttcagagactgaaactagagaaa
gacaactggcttttagcaaagtctaccaaaaatgagaccatcacaaaatttttacagctg
tgtatatttcctcgatgcattttttcagcaattgatgctgtttattgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctttgctatgatcgagtt
ttttctgacataatttacacggttgcaagctgcactgaaaatgaagctagtcggtatggg
agattcctttgctgtatgttagagacagtgaccaggtggcatagtgatagagccacttat
gagaaggaatgtggaaactatccaggattccttaccatattacgggcaactggatttgat
ggtggaaacaaagctgatcagttagattatgaaaattttcgacatgttgtccacaaatgg
cattacaaattaaccaaggcctcggttcattgccttgagacaggcgaatatactcacatc
aggaatatattgattgtgctaacaaaaatacttccttggtacccaaaagttttgaatctg
ggtcaggctttggaaagaagagtgaataaaatatgccaagaagaaaaagagaagaggcca
gatctttatgcattggctatgggctactcggggcagttgaaaagtagaaagtcacacatg
atacctgaaaatgaatttcatcacaaggatcctcctccaaggaatgctgttgccagtgta
caaaatgggcctggtggtgggacttcttcatcatccataggaagtgcgtctaaatcagat
gaaagcggtgctgaggagactgataaatcaagggagagatctcagtgtggtacaaaagct
gttaataaggcttctagtaccacaccaaaagggaattcaagcaatggaaatagtggctct
aacagcaacaaagctgttaaggaaaatgacaaagaaaaagtaaaagagaaagaaaaagag
aaaaaagagaagactccagctacaactccagaggccagggtacttggtaaagaaagtaaa
gaaaaaccgaaggaagagcggccaaataaagatgacaaagcaagagagacaaaggaaaga
acacctaaatctgacaaagagaaggagaagttcaagaaggaagaaaaagcaaaagatgag
aaattcaagaccactgtccccagcgtagaatcaaaatcgactcaagaaagggaaagagag
aaggagccatccagagaaagagatgtagcaaaggaaatgaagtcaaaggaaaatgttaaa
ggaggagaaaaaccaccagtttcagggtccttgaagtcacctgttccccgatcagatatc
tcggagcctgacagagaacaaaaacgccgcaaaattgatactcatccttctccatcacat
tcctccactgtaaaggacagtctcatcgatctcaaggactcttcagcaaagctctacatt
aaccataatcctccaccactgtccaagagtaaggagagagaaatggacaagaaagatttg
gacaagtcaagggaaagatccagagaaagagagaaaaaagatgaaaaggacaggaaagag
cggaaaagggatcattcaaacaatgaccgtgaagtgccaccggacataacaaagaggcgg
aaagaggagaatggaacaatgggggtttcaaaacacaaaagtgaaagtccatgtgagtct
caatatccaaatgagaaagacaaagagaaaaataagtcaaaatcttcaggcaaagaaaaa
ggcagtagtgattcgtttaaatctgagaagatggataaaatctcctctggtggcaaaaag
gaatccaggcatgataaagaaaagatagaaaagaaagaaaaacgggatagttcaggagga
aaagaagagaagaaacatcataagtcctctgacaagcacagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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