KEGG   Rattus norvegicus (rat): 313387
Entry
313387            CDS       T01003                                 
Symbol
Usp1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 1
  KO
K11832  ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    313387 (Usp1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    313387 (Usp1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    313387 (Usp1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    313387 (Usp1)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     313387 (Usp1)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   313387 (Usp1)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    313387 (Usp1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     313387 (Usp1)
SSDB
Motif
Pfam: UCH UCH_1
Other DBs
NCBI-GeneID: 313387
NCBI-ProteinID: NP_001015015
RGD: 1306461
Ensembl: ENSRNOG00000007890
UniProt: Q569C3 A6JRL2
Position
5:118703056..118714426
AA seq 784 aa
MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQEDEEKASEYRGSEIDQV
VPAAQSSPVSCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKAGVKHLFNIISRKK
EALKDDSIQKDKGSCKEDPLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEIKNLTEFSSKVEEKSLQK
EETGGISSTETDSTRNLDDLKEQLPKGNWKRKSDGESGNMKKKVKLSRESQPLEENQRQT
RSKRKATGDTLEASPKIIPKCVSENESAKPSQKKSKVKINWLKPATKQPSILSKFCSLGK
ITTNQRSKGQPKVNEGDLEEDLEKDGRDNTVNGSGPASPGSSVTPVDSSEAKSINKGAEQ
IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGTAENYDDEVSIRVGGNAQPSKVLNKK
NVEGIGLLGGQKSKADYELCSKASNPEKVVGTPFTDSRNSETNDTNGTQESDRSKESSDQ
TGINVSGLENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLLF
YKKL
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgcctggcgtcatacctagtgaaagtaatgggctttcaagaggcagtccatccaagaag
aacaggctgtctttgaagttttttcagaaaaaggaaactaaaagagccttagacttcact
gattctcaagaagatgaagaaaaagcttctgaatatagaggatctgagattgatcaagtt
gttcctgctgcacagtcctcaccagtaagctgtgagaagagagaaaacttgttaccgttt
gtgggactgaataaccttggcaacacttgttatctgaatagtattcttcaggtgttgtac
ttttgtcctggcttcaaggctggagtgaagcacttatttaatattatttcaaggaagaaa
gaagctctgaaggatgactctattcagaaggataagggaagctgcaaagaagatcctttg
gcaagttatgagcttatatgcagtttacagtccttaataatctcagttgaacagcttcaa
gctagttttctcttaaatccagaaaaatatacagatgaacttgcgacacagccaaggcga
ctgcttaacaccctgagggaactcaaccctatgtatgaaggctatctccagcacgatgca
caggaagtgctacagtgtattctgggaaacattcaagaaacatgccaactcctaaaaaaa
gaagaaataaaaaacttgactgaattttccagcaaggttgaagaaaaatctcttcagaaa
gaggagacaggtgggattagcagcacagagactgacagtacgaggaatctggacgacctc
aaagaacaactcccaaaagggaactggaaaagaaagagtgacggagaatcggggaacatg
aagaaaaaggttaaactgtccagggaatcccagccattggaagaaaaccagagacaaacc
agatcgaaaagaaaagctaccggagacacactagaggcttctcctaaaatcatccccaag
tgtgtttctgaaaatgagagtgcaaagccctcacagaagaaatccaaagttaaaataaat
tggttaaagccggccactaagcagcccagcattctttccaagttctgtagtcttgggaaa
ataacaaccaaccagcgctccaaagggcaacctaaagtaaacgagggtgaccttgaggag
gatttggagaaggatggacgcgacaacacagttaatggtagtggacccgcatctccagga
agtagcgtcacacctgtggacagtagtgaagctaagtccataaacaaaggtgcagagcag
attggttttgaactagtagagaaattgtttcaaggtcagctagtactgaggactcgttgt
ttggaatgtgaaagcttaacagaaagaagagaagactttcaggatattagtgtcccggta
caagaagatgaactttctaaagtcgaggagagctctgagatttctccagagccaaaaaca
gaaatgaagaccctgagatgggcaatttcacagtttgcttcagtggagagaattgtagga
gaggataaatatttctgtgaaaattgccatcattatacggaagcagagcgaagtctcttg
tttgataaaatgcctgaagttatcactattcatctgaagtgctttgctgctagtggcttg
gagtttgattgttatggtggtggactttccaagatcaacactcctttattgacacctctt
aaactgtcactagaagaatggagcacaaagccgactaatgacagctatggattatttgct
gttgtgatgcacagtggcattactattagtagtgggcactatactgcatctgttaaagtc
actgaccttaacagtctagaactagataagggcaattttgtggttgaccagatgtgtgag
ataggtaagccagagccactgaatgaggaggaagcaagggggacggctgaaaattatgac
gacgaagtatcaattagagttggtggtaatgcccagccaagtaaagttttgaacaaaaaa
aatgtagaaggtattggacttcttggaggacagaagagcaaagcagattatgagctgtgc
agcaaagcatctaatcctgagaaagttgtcgggacaccattcactgacagtagaaattct
gaaactaatgatactaacgggacccaggaatctgacaggagcaaggagtccagtgaccaa
acaggcattaacgtgagtggactggagaacaaaatttcctatgtagtgcaaagcttaaag
gagtacgaggggaagtggttgctctttgatgactctgaagtaaaagttacagaagagaaa
gactttctgaattctctttccccttctacatctcctacatctactccctacttgctattt
tataaaaaactatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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