KEGG   Rattus norvegicus (rat): 313449
Entry
313449            CDS       T01003                                 
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
  KO
K14328  regulator of nonsense transcripts 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    313449 (Upf3b)
   03015 mRNA surveillance pathway
    313449 (Upf3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    313449 (Upf3b)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     313449 (Upf3b)
   mRNA cycle factors
    P-body specific factors
     313449 (Upf3b)
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1
Other DBs
NCBI-GeneID: 313449
NCBI-ProteinID: NP_001129345
RGD: 1560264
Ensembl: ENSRNOG00000039994
Vega: OTTRNOG00000002019
UniProt: D3ZBE8
Position
X:complement(121200993..121219059)
AA seq 472 aa
MKEEKDHRPKEKRVTLLTPQGATGGCIGATAEGAKGDDRQDRNRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERIPEREKIRDEPKIKLLRKPEKGDEKELDKRDKTKRLDKENLNEDR
ASGHSYTLPRRSDVELKDEKPKRPDDESVRDYRDRDRDYERDQERMIRERERMKRQEEER
RRQQQKERYEKEKAFKRKEEEMKREKEALRDKGKKSENTESICSLEKIEKKEEVVKRDRI
RNKDRPAMQLYQPGARSRSRLCPADDSIKPGDSPVEKKQESGISHRKEGGEE
NT seq 1419 nt   +upstreamnt  +downstreamnt
atgaaggaagaaaaagatcataggcctaaggagaaacgagtgaccctgttaacgcctcag
ggcgctacaggcggctgcattggagctaccgcagaaggcgccaaaggggacgataggcaa
gatcgcaacagggacaagaaagaagctttgagcaaggtcgtaattcgaagattacctccc
actctgaccaaggagcagcttcaggaacatcttcaacctatgcctgagcatgattatttt
gagtttttttccaatgatactagtctttatcctcatatgtatgccagagcatatatcaac
tttaaaaaccaagaggacattcttttattcagggaccgatttgatggctatgtattcctt
gacaataaaggtcaggaatatcatgctatagtagaatttgcaccatttcaaaaagctgca
aaaaagaagattaagaaaagagatacaaaagttgggactatcgaggatgatccagaatac
agaaaatttttggagagttatgccacagacaatgagaaaatgacatctactccagagaca
ttgctggaagaaattgaagccaaaaatcgagaattaatagctaaaaggacaaccccactt
ttgagcttcctgaagaacaagcagagaatgagagaagaaaagagagaagagaggaggaga
cgggaaatagagaggaaaagacaaagagaagaagagagaagaaaatggaaagaagaggag
aaacgaaaaagaaaagatatagaaaaactaaagaagatagaaagaattccagaaagggaa
aagataagggatgaaccaaagattaagctgctcaggaaaccagaaaaaggagatgaaaag
gaacttgataaaagagacaaaaccaagagactggacaaagaaaatctgaatgaagacaga
gccagtgggcacagttatactctgcccaggcgttctgatgtcgaactgaaggatgaaaaa
ccaaagaggcctgatgacgagagtgtcagagactacagagatagggaccgggattatgaa
agagatcaggagcgcatgatccgagaaagagagaggatgaagcggcaggaagaagagcgc
cggaggcagcagcagaaggagcgctatgagaaagagaaggcttttaagcgaaaggaagaa
gaaatgaagagagagaaagaagcacttcgagataaaggaaagaagagtgagaatacagaa
tcaatatgctcgttagaaaaaattgaaaaaaaagaggaagtggttaagagagatcgcata
aggaacaaggatcgtccagcaatgcagctttaccaaccaggggctcgaagccgaagtcga
ctctgtcccgccgatgacagcatcaagcctggagattccccagtggagaaaaagcaggaa
agtggtattagccatagaaaagaaggaggagaggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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