KEGG   Rattus norvegicus (rat): 313620
Entry
313620            CDS       T01003                                 
Symbol
Srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    313620 (Srrm1)
   03015 mRNA surveillance pathway
    313620 (Srrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    313620 (Srrm1)
   03041 Spliceosome [BR:rno03041]
    313620 (Srrm1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     313620 (Srrm1)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    313620 (Srrm1)
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 313620
NCBI-ProteinID: NP_001101456
RGD: 1311258
Ensembl: ENSRNOG00000018194
UniProt: B2RYB3
Position
5:complement(152843167..152875554)
AA seq 908 aa
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATS
TSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRH
RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSS
SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNR
ARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQR
RQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSP
RSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRY
SPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSL
SSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPS
TRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPS
TNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAV
AVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSMR
KAQVSPQS
NT seq 2727 nt   +upstreamnt  +downstreamnt
atggacgcgggattcttccgcggaacaagtgcggagcaggataatcgattcagcaacaaa
cagaagaaactcctcaagcagctgaaatttgcagaatgtctagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataacaaaaagagtgactgagatcctt
ggattcgaagatgatgttgtgattgagtttatattcaaccagctggaagtgaagaaccca
gattccaaaatgatgcaaatcaacctgactggatttttgaatgggaagaatgctagagag
ttcatgggagaactgtggcctctgctgttaagtgcacaagaaaatatcgccggaatccct
tctgctttcctagagttgaagaaggaagagataaagcagagacaaattgaacaagaaaaa
ttggcgtctctgaaaaaacaagatgaagataaagataagagggataaggaagaaaaagaa
agcagcagagagaagagggagcggtctcgcagcccaagaagacgcaaatccagatctcct
tcccctagaagacgatcttcccctgtcaggagagagagaaagcgcagtcactctcgatct
ccccgtcacagaaccaagagccggagcccttcccctgccccagaaaagaaggagaaatct
ccagagctcccagaaccatcagtgagaatgaaagactcttcagtacaagaggccacatct
acaagtgacatcttgaaagctcccaagcctgagcctgtaccagagcccaaagaaccatct
ccagaaaaaaattccaaaaaggaaaaggaaaagactcgaccaagatctcggtcacgttcc
aaatcacggtcccggactcgttctcggtcaccttctcatacgagacccagacggcgacat
agatcccgatcaagatcatactctcctagaaggcgaccaagccccagacgacgaccatct
ccccgaagaagaactccaccaagacggatgcctcctccaccacggcacaggaggagtagg
tctccagggagacgaaggagacgttcttccgcatcgctgtctggaagtagctcgtcgtcc
tcttcatctcgttcccggtcaccgccaaagaagcctcccaagaggacatccagccctcct
cggaaaactcgtaggttatcaccttcggcaagtcctccgaggcgaaggcaccggccgtca
tctccagcaactccgccacccaaaactcgccattccccaactccccagcagtcaaaccgt
gcaagaaaaagtcgtgtgtctgtgtctccaggaagaacctcgggtaaagtgacaaaacat
aaaggcactgagaaaagagagtcaccttctccagcacccaagcctagaaaagtggagctg
tctgagtctgaggaagacaaaggcagcaaaatggctgcagctgattctgtgcagcagagg
cgacaatatagacgacagaaccagcagtcttcatctgactctggctcctcttccacctca
gaagatgagcggcccaagagatcccatgtgaagaatggtgaggtaggcaggcggcggaga
cattctccttctcggagtgcctctccatcacctcgaaagcgccaaaaagagacttcccct
cgtagtagaaggaggagaagtccttccccacctcctgccagaagacgacgatctccttct
ccagcccctcctccccctcctcccccacctcctcggcggcgcagatctcccaccccacca
ccacgacgaaggaccccttctcctcccccacgccgccgctcaccgtctccaagaagatac
tctcctcccatccagaggagatactctccttccccacctccaaagaggagaactgcctcg
cccccacccccacccaagcgaagggcatcgccatctcctccaccaaagcgccgggtttcc
cactctccacctcctaaacaaagaagccccccagtcaccaagagacgctcaccctcctta
tcttcaaagcataggaaagggtcttccccaggccgctccactcgggaggcccggtcacca
caaccaaacaaaaggcactcgccctcaccacgacctcgggcgcctcagacctcaagccct
ccccctgttcgaagaggagcttcagcgtctccccaaggaaggcagtccccgtctccgagt
actaggcctattaggagagtctccaggactccggaacccaaaaagataaaaaaggctgcc
tcaccaagccctcagtccgtaagaagggtttcatcttcccgctctgtctctggatctcct
gagccaacagctaaaaagcctccagcacccccctctcctgtgcagtctcagtcaccctcc
acaaactggtcacctgcagcaccagccaagaaggctaaaagcccaacaccaagcccgtcc
cctgccaggaattctgatcaagaaggaggtggaaagaagaagaagaagaagaaggacaag
aaacataagaaggataagaaacacaagaagcacaaaaaacacaagaaggagaaggctgtg
gccgtagccaccccagctcctgctgcccctgcagctgtctctgctgccgccactccatca
gcccaggaagagcctgcggcagcaccagagcccaggaaggagactgagagtgaagctgaa
gatgacaaccttgatgacttagagaggcaccttcgggagaaggcccttcgatccatgcgg
aaggcccaagtgtccccacagtcctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (20)   
   UniProt (1)   
   RefSeq(pep) (19)   
DNA sequence (27)   
   RefSeq(nuc) (19)   
   GenBank (4)   
   EMBL (4)   
Protein domain (1)   
   Pfam (1)   
All databases (60)   

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