KEGG   Rattus norvegicus (rat): 313717
Entry
313717            CDS       T01003                                 
Symbol
Clstn1
Name
(RefSeq) calsyntenin-1 precursor
  KO
K22659  calsyntenin 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    313717 (Clstn1)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Cadherin related
   313717 (Clstn1)
SSDB
Motif
Pfam: CLSTN_C Cadherin Laminin_G_3 Laminin_G_2 CDC45 FAM176 EphA2_TM V_ATPase_I UQ_con Cadherin_C_2 SID-1_RNA_chan Zip
Other DBs
NCBI-GeneID: 313717
NCBI-ProteinID: NP_001007093
RGD: 1306458
Ensembl: ENSRNOG00000016398
UniProt: Q6Q0N0
Position
5:165314128..165377627
AA seq 952 aa
MLRRPAPALARAVRLLLAGLLYGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLI
ALDKDSPLRFAGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQA
YDCGKGPDGTGVKKSHKATVHIQVNDVNEYAPVFKEKSYKAAVVEGKQHGSILRVEAVDA
DCSPQFSQICSYEILTPDVPFTVDKDGYIKNTEKLNYGKEHQYKLTVTAYDCGKKRATED
VLVKISVKPTCSPGWQGWSSRIEYEPGTGALAVFPSIHLETCDEPVASVQATVELETSHI
GKGCDRDTYSEKSLHRLCGAAAGTSELLPSPSSSFNWTVGLPTDNGHDSDQVFEFNGTQA
VRIPDGVVTLDPKEPFTISVWMRHGPFGRKKETILCSSDKTDMNRHHYSLYVHGCRLIFL
LRQDPSEEKKYRPAEFHWKLNQVCDEDWHHFVLNVEVPSVTLYVDGVSHEPFSVTEDYPL
HPTKIETQLVVGACWQGGDLHMTQFFRGNLAGLTVRSGKLADKKVIDCLYTCKEGLDLQV
PEDGNRGVQIQTSSSQAVLTLEGENVGELDKAMQHISYLNSRQFPTPGIRRLKITSTVKC
FNEAACIEVPPVEGYVMVLQPEEPKISLSGVHHFARAASEFESPEGVSLFPELKIISTIT
REVEPEADGAEDPTVQESLVSEEIVHDLDTCEVTVEGEELNAEQESLEVDVARLQQKGIE
VNHSDLGVVFTGVETMASYEEVLHLLRYRNWHTRSLLDRKFKLICSELNGRYLSNEFKVE
VNVIHTANPVEHANHMAAQPQFVHPEHRSFVDLSGHNLASPHPFAVVPSTATVVIVVCVS
FLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSSEEEEE
EEEEEESEDGEEEEDITSAESESSEEEEGGPGDGQNTTRQQQLEWDYSTLSY
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgctgcgccgccctgcgcccgcgctggcccgggctgtccggctgctgctggcggggctg
ctgtacggcggcggggtctgggccgcgcgagttaacaagcacaagccatggctggagccc
acctaccacgggatcgtcaccgagaacgataacacggtgctgctcgacccccccctcatc
gccctggacaaagactcaccgctgcgctttgcaggtgagatttgtggctttaaaatccac
gggcagaatgtccccttcgatgccgtggtagtggataagtccacgggtgagggaataatc
cgatcaaaagagaaactggactgtgagttgcagaaagactatacattcaccatccaggcc
tacgactgcgggaagggacccgatggcaccggtgtgaaaaaatctcacaaagcaaccgtg
cacatccaggtgaacgacgtgaatgagtacgcccccgtgttcaaggagaagtcgtacaag
gcggccgtggtggagggcaagcagcacggcagcatcctcagggtggaggccgtggatgca
gactgctcgccccagttcagccagatctgcagctatgagattctcaccccagatgtgccg
ttcactgtggacaaagacggttacatcaaaaacacagagaagcttaactacggcaaagag
catcagtataagctcactgtcaccgcctatgactgtgggaagaaaagagccacggaggac
gtcctggtgaagatcagcgttaagcccacctgcagccccgggtggcaaggctggagcagc
agaattgaatatgagcccggcacaggcgctttggccgtcttcccgagcatccacttggag
acctgcgacgagcctgtcgcctctgtgcaggccacagtggagctggagaccagccacata
gggaaaggctgcgaccgagacacctactccgagaagtccctccaccggctctgtggggct
gctgctggtacctcagagctgctcccgtcgcccagtagctccttcaattggaccgtcggc
ctccccactgacaacggccatgacagtgaccaggtctttgagttcaatggcacacaggcg
gtgcggatcccagacggtgttgtgacccttgaccccaaagagccttttacaatttccgtg
tggatgcggcatgggccttttggccggaagaaggagacaattctctgcagttcggataaa
acagatatgaaccgacaccattattcgctctatgtccacgggtgcagactcattttcctc
ctccgtcaggacccgtctgaggagaagaagtacaggcctgcggagttccactggaagctg
aaccaagtctgtgatgaggattggcaccactttgtcctcaatgtggaagtcccaagtgtg
accctctatgtggacggcgtctctcatgagcccttctccgtgaccgaggactacccactt
catccaaccaaaatagaaactcagcttgtggtcggagcttgctggcaaggtggtgacctg
cacatgacgcagtttttccgaggtaacctggctggcctcacagtccgttctgggaaactg
gcagataagaaagtgatcgactgtctgtacacctgcaaagaggggctggacctgcaggtc
cctgaggatggcaacagaggggtgcagatccaaacaagctccagtcaggcggtattgacc
ttggagggggagaatgtcggagagttggataaggccatgcagcacatttcttacctcaac
tcaaggcagttccccacaccaggcatccgcaggctgaaaatcaccagcaccgtcaagtgc
tttaatgaggcggcttgcatcgaggtgcctccggtggagggctacgtgatggttttacag
ccagaagaacccaagatcagcctgagtggggtccaccactttgcccgcgcagcttccgag
tttgagagcccggagggtgtttcccttttccctgagctgaaaatcataagcaccatcacc
agagaggtggagcccgaggcggacggggctgaggaccccacagtgcaagagtccctggtg
tcggaggagattgtgcacgacctggacacctgtgaggtcacggtggaaggggaggagctg
aacgcagagcaggagagcctagaggtggacgtggcccgcctccagcagaagggcatcgaa
gtgaaccactctgacctgggcgtggtcttcacaggtgtggaaaccatggcaagctacgag
gaggttctgcacctcctgcgctatcggaattggcacaccaggtccctgctggaccggaag
ttcaagctcatttgctcggaactaaatggtcgttacctcagcaacgagttcaaggtggag
gtgaatgtgatccacacagccaaccccgtggaacacgctaatcacatggccgcccagcca
cagtttgtccaccctgaacaccgatccttcgtggacctgtctggtcacaacttggccagt
cctcacccatttgcagttgtccccagcacggcgactgtcgtgattgtggtatgtgtcagc
ttcctggttttcatgatcatcctgggggtgtttcggatccgagctgcacatcagcgaacg
atgcgggaccaggacaccgggaaggagaacgagatggactgggatgactctgccttgacc
atcactgtcaaccccatggagacgtacgaggaccagcacagcagtgaggaggaggaagaa
gaggaagaggaggaggagagtgaagacggggaggaggaggaggacatcaccagtgccgag
tcagagagcagtgaggaggaggaaggcggccccggggacggccagaacaccacccggcag
cagcagctagaatgggactactccacactcagctactaa

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (12)   
   Pfam (12)   
All databases (35)   

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