KEGG   Rattus norvegicus (rat): 314171
Entry
314171            CDS       T01003                                 
Symbol
Prpf39
Name
(RefSeq) pre-mRNA-processing factor 39
  KO
K13217  pre-mRNA-processing factor 39
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    314171 (Prpf39)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    314171 (Prpf39)
SSDB
Motif
Pfam: TPR_14 Suf TPR_16
Other DBs
NCBI-GeneID: 314171
NCBI-ProteinID: NP_001101496
RGD: 1308702
Ensembl: ENSRNOG00000004521
Position
6:88825227..88851342
AA seq 664 aa
MQNSHMDEYRNSDNGSTGNSSEVVIEHPDFSTEIMNVTEMEQSPDASPSVRVSTEENEMA
NAVDLPVTETEGNFPPEFEKFWKTVETNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFI
HYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPE
TNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHH
FQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHNGDDGPPGDDLPSGIEDITDPAKLI
TEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFE
IENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPMA
HMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIR
NAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDLK
QNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDT
LKRKAENGSEEPEEKKAHTEDVSSAQIIDGDLQANQAAYNYSAWYQYNYQNPWNYGQYYP
PPPT
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgcaaaattcccacatggatgagtacaggaactctgataatggcagcacaggcaacagt
tcagaggtagtgatagagcatccagattttagtactgagattatgaacgttacggagatg
gagcagtcgcctgatgcctctcccagcgtacgtgtatctacagaagaaaacgaaatggca
aatgctgtggaccttccagtgacagaaacagaaggaaacttccctccagagtttgaaaaa
ttttggaaaacagtagaaacgaatcctcaggattttacaggatgggtatatttgcttcag
tatgtagaacaggagaatcacttgatggctgccagaaaagcatttgacaaatttttcata
cattacccgtattgctatggttactggaaaaagtatgcagaccttgaaaagcgacatgac
aacattaaacaatcagatgaggtttatcgacgggggcttcaggcaatacctcttagtgtt
gatctttggatacattatataaacttcttaaaagaaacattggaccctggtgatcctgag
acaaacagtacaataagaggaacttttgagcatgctgttctagctgcaggaacggatttt
cgatctgacaaattatgggaaatgtatataaactgggagaatgaacagggaaatctgaga
gaagttacagctgtatacgatcgtattcttggtattccaacccagctgtacagtcatcat
tttcagagatttaaagaacatgtgcaaaataacttgcctagagatcttttaactggtgaa
cagtttattcagttgagaagggaattagcttctgtaaatggacacaatggtgatgacgga
cctcctggtgatgaccttccatcaggaattgaagacataactgatccagcaaagctaatt
actgaaatagaaaacatgagacatagaatcattgaaattcatcaagaaatgtttaattat
aatgagcatgaagttagtaagaggtggacatttgaagaaggtattaaaagaccttatttt
catgtgaaaccactggaaaaggctcagctaaaaaactggaaagaatacttagaatttgaa
attgaaaatgggactcatgaaagagtcgtggttctctttgaaagatgtgtcatatcttgt
gccctctatgaggagttttggattaagtatgccaagtacatggaaaaccacagcattgaa
ggagtgaggcatgtcttcagcagagcctgtactgttcatctcccaaagaagcccatggcg
cacatgctgtgggcagcttttgaggaacaacaggggaatattaatgaagccaggattatc
ttgagaacgtttgaagaatgtgttctaggattggcaatggttcgattgcgaagagttagt
ttagaacgacggcatggaaatatggaagaagctgaacatttgcttcaagacgctataagg
aatgccaaatcaaataatgagtcatcattttatgctatcaaactagcccgacatcttttc
aaaatacagaaaaaccttccaaaatcaagaaaggtacttttggaagcaatcgaaaaagat
aaggaaaacacaaagttatacctcaatttacttgaaatggaatacagttgtgacctcaag
caaaatgaagaaaatatcctcaattgctttgacaaagccatacatggttcgttgcctatt
aaaatgagaattacgttttctcaaagaaaagtggaattccttgaagattttggctcagat
gttaataagcttctgaatgcatatgatgaacatcaaacacttctaaaagaacaggacact
ttaaaaaggaaagctgaaaatggctcagaagaaccagaagaaaagaaagcacacacagaa
gatgtatcatcagcacagatcattgatggggatttacaggcaaatcaagctgcatataat
tacagtgcctggtatcagtacaattatcagaatccctggaattacggacagtattaccct
ccacctccaacctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (11)   
   RefSeq(nuc) (7)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (30)   

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