KEGG   Rattus norvegicus (rat): 314259
Entry
314259            CDS       T01003                                 
Symbol
Pals1
Name
(RefSeq) protein PALS1
  KO
K06091  MAGUK p55 subfamily member 5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04390  Hippo signaling pathway
rno04530  Tight junction
rno05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04390 Hippo signaling pathway
    314259 (Pals1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    314259 (Pals1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    314259 (Pals1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:rno04990]
    314259 (Pals1)
Domain-containing proteins not elsewhere classified [BR:rno04990]
 PDZ domain-containing proteins
  MAGUK family proteins
   314259 (Pals1)
SSDB
Motif
Pfam: Guanylate_kin L27_N PDZ SH3_2 PDZ_6 L27 SH3_1 PDZ_2 SH3_9 MMR_HSR1
Other DBs
NCBI-GeneID: 314259
NCBI-ProteinID: NP_001101504
RGD: 1308071
Ensembl: ENSRNOG00000008788
UniProt: B4F7E7
Position
6:103327965..103384543
AA seq 675 aa
MTTSYMNGHVTEESDSGIKNLGLASPEEHPKHREMAVDCPGDLGTRLMPVRRSAQLERIR
QQQEDMRRRREEEGKKQELDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVK
ILEVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMNKASPPF
PLIANVQDLVQEVQTVLKPVHQKEGQELTALLNAPHIQALLLAHDKVAEQEMQLEPITDE
RVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDE
VLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSD
DPYVPCRELGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMK
QTIEEDKEPEKSGKLWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKR
PIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADI
AAGKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLSLRAQSLKTLRNSDLKPYIIFIAPP
SQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLIN
KLDTEPQWVPSTWLR
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgacaacatcgtatatgaatgggcatgtgacagaggaatcagacagcggaataaaaaat
cttggtcttgcatcaccagaggaacatccgaaacacagagagatggctgttgactgccct
ggagatttgggcaccagattgatgccagtgcgaagaagtgcacagttagagcgcattcga
cagcaacaggaggatatgagacgtaggcgtgaagaagaagggaaaaagcaagaacttgac
ctaaattcttccatgagacttaagaaactagctcaaattcctccgaagactggaatagat
aaccctatatttgacacagaagaaggaattgttttagaaagtcctcactatgctgtgaaa
atattagaagttgaagacttgttctcttcacttaaacatatccagcacactttggttgat
tctcagagccaggaggatatttcactgcttttacagcttgtacaaaatagagattttcag
aatgcattcaagatacacaatgctgtcacagtgcacatgaacaaggccagccctccgttt
cctcttatcgccaatgtacaagaccttgtacaagaggtacaaactgtcttaaagccagtc
catcagaaggaaggacaagaattaactgctttgttaaatgctccacatattcaggcactt
ttactggcccatgataaggttgctgagcaggaaatgcagctagagcccataacagatgag
agagtctatgaaagtatcggccattatgggggagaaactgtaaaaatagttcgtatagaa
aaggctcgggatattccattgggtgccacggttcgtaatgagatggattctgtcatcata
agtcggatagtgaaaggaggcgcggcagagaagagcgggcttctgcacgaaggagacgaa
gtcctagagatcaatggcatcgaaatccggggcaaggacgtcaatgaggtttttgacttg
ttgtctgatatgcacggtacgttgacatttgttctgattcctagtcaacagatcaagcct
cctcccgccaaagaaactgtaatccacgtgaaagctcattttgactatgacccctcagat
gacccttatgttccctgtcgagagttaggactgtcttttcaaaaaggagatatacttcat
gtgattagtcaagaagatccgaattggtggcaggcctatagagaaggagacgaagacaat
cagcctctagctggacttgttccagggaaaagttttcagcagcaaagggaagccatgaag
caaactatagaagaagataaggagccagaaaaatcaggaaaactatggtgtgcaaagaag
aataaaaagaagaggaaaaaggttttatataatgccaataaaaatgatgattatgacaat
gaagagatcctaacgtatgaagaaatgtcactttaccatcagccagcaaataggaaaaga
cctatcatcttgattggtccccagaactgtggccagaatgaactgcgccagagactcatg
aacaaagaaaaagaccgctttgcatctgcagttcctcatacaactcggaataggcgagac
cacgaagtagctgggagagattaccactttgtttcacggcaagcatttgaagcagatata
gcagctggcaagttcattgaacatggtgaatttgagaaaaacctgtatggaaccagcata
gattctgtacgacaagtaatcaactctggcaaaatatgtcttttaagtcttcgagcacag
tccttgaagaccctccggaattcagatttgaaaccatacatcatcttcattgcaccacct
tcacaagagagacttcgggcgttgttagccaaggaaggcaagaacccaaagccggaagaa
ttaagggagattattgagaagacgagagagatggaacagaacaacggccactacttcgac
actgcgattgtgaattcagatcttgataaagcctatcaggaactgcttaggcttattaac
aaactggacaccgagcctcagtgggtgccatccacctggctaaggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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