KEGG   Rattus norvegicus (rat): 314300
Entry
314300            CDS       T01003                                 
Symbol
Riox1
Name
(RefSeq) ribosomal oxygenase 1
  KO
K16914  protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rno03009]
    314300 (Riox1)
   03036 Chromosome and associated proteins [BR:rno03036]
    314300 (Riox1)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     314300 (Riox1)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     314300 (Riox1)
    1.14.11.79  protein-L-histidine (3S)-3-hydroxylase
     314300 (Riox1)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    314300 (Riox1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    314300 (Riox1)
SSDB
Motif
Pfam: RIOX1_C_WH JmjC_2 Cupin_8 Cupin_1 Cupin_2
Other DBs
NCBI-GeneID: 314300
NCBI-ProteinID: NP_001101510
RGD: 1307704
Ensembl: ENSRNOG00000010126
UniProt: D3ZU57
Position
6:109310748..109313365
AA seq 597 aa
MDELPNGNGAAPLKRGRGRRRRQPQPRGASVLALPLRPRKVRRHRKSAASRVAALRARAL
LSEDSDSNVESVRGKRERPAELPEASRSAEPRPVPVRPRPASATLPRRVEGRAALSRNLG
KPAPLPGSHVDDPERPWDSPLQQVLAELNGIPSSRRRAARLFEWLLAPLPPDHFYRRLWE
REAVLVRRQDHSYYEGLFSTSDLDWMLRYEDVHFGQHLDAARYIDGRRETLNPPGRALPA
AAWSLYQAGCSLRLLCPQAFSPTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDI
EAFVLQLEGRKLWRVYRPRDPSEELALTSSPNFSQEDLGEPVLQTVLEPGDLLYFPRGFI
HQAECQDGVHSLHLTLSTYQRNTWGDFLEAVLPLAMQAAIEENVEFRRGLPRDFMDYMGA
QHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVH
GLPIRWEAGEPVNVGAQLTTETQVHMLQDGIARLVGEGGRLFLYYTVENSRVYHLEEPKC
LEIYPQQADAMELLLRSYPEFVRVGDLPCDSVEDQLSLATMLYDKGLLLTKTPLVLS
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggatgagcttccgaatggcaacggcgcggcgccgctgaagcgtggacgcgggaggcgc
cggcgccagccgcagccccgcggcgcgtcggtcttggccctgcccttacggccacggaag
gtccgaaggcaccggaaaagtgcggcgtcccgcgtggccgcgctgagagctcgcgcgctc
ctgagcgaagactcggactcgaacgtggaatcggtccggggcaagcgggagaggcctgca
gagctaccggaggcctcgcggtcggccgaaccgcggccggtgccagtgcgtccgagaccg
gcttcggcgactctgccgcgccgcgtggaggggcgggccgcgctctcccgaaacctgggg
aagcccgctccgttgccgggctcgcacgtggatgacccggaacggccctgggattcgccg
ctgcagcaggtgttggcggagctgaacggcatccccagcagccggaggcgcgccgcccgc
ctcttcgagtggctcctggcgcccctgcctccggaccacttctaccggcggctgtgggag
cgggaggcggtgctggtgcggcggcaggaccacagctactacgaaggtctattctctacc
tccgacctggactggatgctgcgctacgaggacgtgcacttcgggcagcacctggatgct
gcgcgctacatcgatgggcggcgggaaaccttgaacccaccgggccgggcacttcccgct
gccgcgtggtccttgtaccaagccggctgctccttacgccttctttgcccgcaagctttc
tcgcccacggtgtggcagtttttggctgtgcttcaggaacagtttggaagcatggcaggc
tccaacgtttacctcacgccccccaactcgcagggcttcgctccccactacgacgacatc
gaggctttcgtgttacagctggaaggtcggaaactctggcgagtctaccgaccgcgggac
cccagtgaagagttggcactgacatctagtcccaacttcagccaggaggaccttggtgag
ccggtactccaaacggtactggaacccggagacctgctctattttcctcggggcttcatt
catcaagctgaatgtcaggatggagtccattctctgcacctcaccttgtctacctaccag
cgcaacacctggggcgacttcctggaggctgttctgcctctggcaatgcaggcagcaata
gaggaaaatgtggaatttcgcaggggtctgcctcgagacttcatggattatatgggggcc
cagcattcagactctaaggatcccagaaggacagctttcatggaaaaagtgcgggtcttg
gttgctcgcctgggacactttgctcctgtcgatgctgtggctgaccagagagcaaaagac
ttcattcacgattccctgccccctgtgttgacggatagggaaagggctctaagtgtgcac
gggctcccgattcgctgggaggctggagaacctgtaaatgtgggggcccagctgacaaca
gaaacccaagtccatatgcttcaggatggcatagctcggctggtgggtgaggggggccgc
ttgttcctgtattacacagtggaaaactctcgagtgtatcatctggaggaacccaagtgc
ttagaaatctacccccagcaagccgatgccatggaactcttgctgcgctcctacccagag
tttgtgagagtaggggatttgccctgtgacagtgtggaagaccagctttccttggcgacc
atgttatatgataaggggctgctgctcactaaaacgcccctagttctgagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (3)   
   KEGG ENZYME (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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