KEGG   Rattus norvegicus (rat): 314380
Entry
314380            CDS       T01003                                 
Symbol
Tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    314380 (Tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    314380 (Tdp1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     314380 (Tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 314380
NCBI-ProteinID: NP_001026827
RGD: 1309618
Ensembl: ENSRNOG00000003831
UniProt: Q4G056 A6JEG4
Position
6:124892821..124960646
AA seq 609 aa
MSQESSYGKWTISSSDDSEDEKPKPVKPSTSSGPQAGQGVSKEPTYTCSEARKAAHKRQI
SPVKFNNTDSVLPHKKQKMDSPEGLGWCLSSSDDEQQPDVTQQEQPKGVPPQEKKYAPSA
NVTTAQKVEDRSPPDSHRAQRADEEYETSGEGQDIWDMLDKENPFQFYLTRVSGIKAKYN
SKALHIKDILSPLFGTLVSSAQFNYCFDVNWLIKQYPPEFRKKPILLVHGDKREAKADLH
AQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLS
PLYPRIYQGNHTSGESSTHFKADLTSYLMAYNAPPLQEWIDIIQEHDLSETNVYLIGSTP
GRFQGSHKDNWGHFRLRKLLQAHAPSAPRGECWPVVGQFSSIGSLGPDESKWLCSEFKES
LLAVREEGRTPGRSAVPLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHK
WSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVTSANLSKAAWGALEKNGAQLMIRSYEL
GVLFLPSAFGLDTFKVKQKFFSSSSEPMASFPVPYDLPPELYGSKDRPWIWNIPYVKAPD
THGNMWVPS
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgtcccaggaaagcagctacggaaagtggacaatatccagtagtgacgacagcgaggat
gaaaagcccaaacctgtcaaaccatcaacatcctctggcccccaggctgggcagggagtg
tcgaaggagcccacgtacacctgctcagaggcccgcaaggctgcacacaagagacagatc
tcacctgtgaaattcaacaacacagactccgtgttaccccacaagaagcagaagatggat
tccccggaaggtctgggctggtgtctgtccagcagcgatgatgagcagcagccggatgtg
acacagcaggagcagcctaagggagtgccacctcaagagaaaaaatatgccccctcagcc
aatgtgactactgcccagaaagttgaggatcgaagccctcctgacagccatagggcccaa
agggcagacgaagagtacgagacctcaggggaaggccaggacatctgggacatgctggat
aaggagaaccccttccagttttatctcactagagtctcggggattaaggcaaagtacaac
tccaaagccctccacatcaaggatattttatcccctctgtttgggacacttgtctcttca
gctcagtttaactactgctttgatgtgaactggctcataaagcaatatccaccagaattc
aggaagaagccgatcctgcttgtgcacggcgataagagggaagccaaggcagacttgcat
gcccaggcgaagccctatgcaaacatttccctctgccaggcaaagttggatattgcattt
ggaacacaccacacgaaaatgatgctcttgctctatgaagaaggcctccgagtcgtcatc
cacacctccaacctcatccgggaagactggcaccagaaaacccaaggaatatggttgagc
cctttgtacccacgaatttaccagggaaaccacacatccggagagtcaagcacccatttc
aaagcggacctcaccagttatttgatggcgtataatgccccccctctccaggaatggata
gacatcatccaagaacacgatctctctgaaaccaatgtttaccttattggttcaacccct
ggacgctttcaaggaagtcacaaagataattggggacattttagacttagaaagcttctg
caggcgcatgcgccatctgcacccaggggcgagtgctggcccgtcgtgggtcagttttca
agcattggctccctggggcctgatgaatccaagtggttgtgctcagagtttaaagagagc
ttgctggcagtgagagaggaaggccggaccccgggcagaagcgcagttcctcttcatctg
atctatccctctgtggaaaatgtgcggaccagcttagaaggatatcctgctgggggctct
cttccctatggcatccagacggctgagaaacagaggtggctgcacccctacttccacaag
tggtcagcagagacatccggccgaagcaatgccatgccacatattaagacgtacatgagg
ccctcaccagacttcagtaaactggcttggttccttgtcacaagtgcaaatctgtccaag
gctgcctggggagcactggagaagaacggcgctcaactgatgatccgctcctatgagctg
ggggtccttttcctcccgtcggcctttggcctggacaccttcaaagtgaaacagaaattc
ttctccagcagcagtgagccaatggcctcctttcctgtgccctatgacctgcccccagag
ctctacgggagtaaagatcggccatggatttggaacattccttatgtcaaagcaccagac
acacatggcaacatgtgggtgccctcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system