KEGG   Rattus norvegicus (rat): 315137
Entry
315137            CDS       T01003                                 
Symbol
Apobec3
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC3
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
rno05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    315137 (Apobec3)
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    315137 (Apobec3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    315137 (Apobec3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     315137 (Apobec3)
SSDB
Motif
Pfam: NAD2 APOBEC2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 dCMP_cyt_deam_1 Toxin-deaminase MafB19-deam
Other DBs
NCBI-GeneID: 315137
NCBI-ProteinID: NP_001028875
RGD: 1307800
Ensembl: ENSRNOG00000016852
UniProt: Q3T1K0
Position
7:113314196..113333306
AA seq 385 aa
MGPVCLGCSHRRPYSPIRNPLKKLYQQTFYFHFKNVRYAWGRKNNFLCYEVNGMDCALPV
PLRQGVFRKQGHIHAELCFIYWFHDKVLRVLSPMEEFKVTWYMSWSPCSKCAEQVARFLA
AHRNLSLAIFSSRLYYYLRNPNYQQKLCRLIQEGVHVAAMDLPEFKKCWNKFVDNDGQPF
RPWMRLRINFSFYDCKLQEIFSRMNLLREDVFYLQFNNSHRVKPVQNRYYRRKSYLCYQL
ERANGQEPLKGYLLYKKGEQHVEILFLEKMRSMELSQVRITCYLTWSPCPNCARQLAAFK
KDHPDLILRIYTSRLYFYWRKKFQKGLCTLWRSGIHVDVMDLPQFADCWTNFVNPQRPFR
PWNELEKNSWRIQRRLRRIKESWGL
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgggaccagtgtgcctgggatgcagccatcgcagaccctattcaccgatcagaaacccg
ctaaagaagttatatcaacaaacattctactttcattttaagaacgtacgctatgcctgg
ggtcgaaagaataacttcttgtgctatgaagtgaatgggatggactgcgctttacctgtc
ccccttcgccaaggggtcttcaggaaacagggccacatccacgccgaactctgcttcata
tactggttccacgacaaagtcctgagagtgctgtccccgatggaagagttcaaggtcacg
tggtacatgtcctggagcccctgcagcaagtgcgcggagcaggtagccaggttcctggcc
gcacaccgcaacctaagcctggccatcttcagctcccgcttgtactactacttaaggaac
ccgaactaccagcagaagctctgcaggctgattcaggaaggagtccacgtggctgccatg
gacctaccagaatttaaaaagtgttggaacaagtttgtggacaatgacggccaaccattc
aggccttggatgagactgagaataaattttagtttctatgattgcaagcttcaggagatt
ttcagccgaatgaatctgctaagggaagatgtattttacttgcaatttaacaacagccac
cgggtcaagccagtccagaatcgctactatcgcaggaagtcctatctgtgctaccaactg
gagcgggccaatggccaagagccactcaaaggctacctgctatacaagaaaggtgaacag
catgtagaaatcctcttccttgagaagatgcggtccatggagctgagccaagtgcgaatt
acctgctacctcacctggagcccctgcccaaactgtgcccggcaactcgctgcattcaaa
aaggatcacccagacctaattctgcggatctatacctcccgcctgtatttctactggagg
aagaagttccagaaggggctgtgtactctgtggcgatcagggatccacgtggacgtcatg
gacctccctcagtttgctgactgctggacaaactttgtgaacccgcaaaggccctttagg
ccatggaatgaactggagaaaaacagctggcgcatacaaaggcggctccggaggatcaag
gagtcctggggcctgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (35)   

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