KEGG   Rattus norvegicus (rat): 315550
Entry
315550            CDS       T01003                                 
Symbol
Rpusd4
Name
(RefSeq) pseudouridylate synthase RPUSD4, mitochondrial
  KO
K22538  mitochondrial RNA pseudouridine synthase RPUSD4 [EC:5.4.99.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    315550 (Rpusd4)
   03029 Mitochondrial biogenesis [BR:rno03029]
    315550 (Rpusd4)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    315550 (Rpusd4)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    315550 (Rpusd4)
SSDB
Motif
Pfam: PseudoU_synth_2
Other DBs
NCBI-GeneID: 315550
NCBI-ProteinID: NP_001020455
RGD: 1311268
Ensembl: ENSRNOG00000011567
UniProt: Q4QQT0 A6JYK3
Position
8:41875217..41884702
AA seq 377 aa
MAAPLLGSPGLQVLSMSSRTGKLFTPSSRSFCSRATSSRPLNAQRLAEKLRAQKQEQKTK
EMRVPTNPVQRRVQELVRFTQQLQRVHPNVLAKELSRRILHQDKDLVVINKPYGLPVHGG
PGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQ
VEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDA
HVAVTQYQVLSSTPSSALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYSDWNRLAPQKL
SAGTLKKLGLQQSKARYIPLHLHARQLILPALGSRTEELLLACKLPHFFARSLRRLGLDM
PNEDQSRSHEARHVEAR
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggccgcgcccttgttgggttcccctggtctccaggtcctgagtatgagttcgcgtacc
gggaaattgttcactcccagctccaggtcgttttgttccagagctacttcctccaggccc
ctgaatgctcagagactggcggagaagctccgagctcagaaacaagagcaaaagacgaag
gaaatgcgggtgcccaccaaccccgttcagcggcgggtgcaggagctagtgagattcaca
cagcagctacagcgtgttcaccccaatgtgcttgctaaggaactgagccgaaggattctc
caccaggacaaagaccttgtggtcattaataaaccctatggtctccctgtccatggtggc
cctggagtccagctctgcatcagtgatgttctgcccatcttggcaaagatgcttcatggc
cacaaggcagaacctttgcatctgtgccaccgtctggacaaagagaccacaggtgtaatg
gttttggcttgggagaaggacatggcacatcaagtccaggagctgtttagaacccgccag
gtggaaaagaagtactgggccatcactgtgcgtgttcccttgccctcggcaggagttgtg
gatatccccatcatggagaaggaagtggctgggcagcagcaacaccacaagatgacgcta
cgtccaagttaccgcatggacaatgggaaaatggtaaaggtacgggccagccgggatgca
cacgtcgcggtaactcagtaccaggtgctgagcagcaccccgtcctccgcccttgtggag
ctgcagcctgtcactggaataaaacatcagctccgagttcacctggcctttgggttggat
tgcccaatcctcggtgatcacaaatactcagactggaataggttggcccctcagaaactt
tctgctggcacactgaagaagctggggctacaacagtcaaaggcccgctacatccctctt
catctgcatgccaggcagctcatcctgcctgctctgggctccaggacagaggaactcctc
ctggcctgcaagcttcctcacttctttgcacgttccctgcgtcgtctgggtttagatatg
ccaaatgaggatcaaagcagaagccatgaggccaggcatgtggaagcacggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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