KEGG   Rattus norvegicus (rat): 315600
Entry
315600            CDS       T01003                                 
Symbol
Vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04140  Autophagy - animal
rno04148  Efferocytosis
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    315600 (Vps11)
   04148 Efferocytosis
    315600 (Vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    315600 (Vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    315600 (Vps11)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    315600 (Vps11)
   Hops complex
    315600 (Vps11)
SSDB
Motif
Pfam: VPS11_C Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-rbx1 zf-C3H2C3 zf-RING_UBOX zf-RING_5 TPR_11 zf-RING_11 DLP_helical zf-HC5HC2H zf-C3HC4_3 zf-RING-like zf-ANAPC11 DUF5847
Other DBs
NCBI-GeneID: 315600
NCBI-ProteinID: NP_001101608
RGD: 1308038
Ensembl: ENSRNOG00000010733
UniProt: A6J3X6
Position
8:complement(53580939..53595378)
AA seq 941 aa
MAAYLQWRRFVFFEKELVKEPLGNDGATPGAAPTSGPTASKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRILPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
ILHKGSYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTS
RDSQNSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
AESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSLEGRGDREFPSCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQAKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQEPSLW
EQALSYFARKEEDCKEYVAAVLRHIENKSLMPPLLVVQTLAHNSTATLSIIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPTARLTPSLEAGLQRDLLMHSRRGT
NT seq 2826 nt   +upstreamnt  +downstreamnt
atggcggcctacctgcagtggcggcgattcgttttcttcgagaaggagttggtgaaggaa
ccgctgggtaatgatggggccactcccggggccgcaccgacctcgggacccactgcttcc
aagttcctttgcctccctcctggcattactgtctgcgactcaggccgcgggagcctggtc
tttggagatatggaaggccagatctggttcttgccacgttctctacagcttacagggttc
caggcctacaagctacgggtgacacacttgtatcagctgaagcagcacaatattctggca
tcagttggtgaggatgaagagggcattaaccccctggtaaagatctggaacctggagaag
agagatggtggcaatccactctgcactcggatcctccctgccatcccagggacagagcca
actgtcgtgtcttgtttgaccgtccatgagaatctcaacttcatggccattggcttcacg
gatggcagtgtcactctgaacaagggagatattacccgggacaggcacagcaagacccag
attttgcacaagggcagctatcctgttactggactggcttttcgccaggcaggaaagacc
actcacttgtttgtcgtgacaactgaaaatgttcagtcctacatagtttcaggaaaggac
taccctcgcgtggagttggacacccatggttgtggcctgcgctgttcggccctcagcgac
ccttctcaggacctgcagttcattgtcgctggagatgagtgtgtctacctttaccagccg
gatgaacgcgggccctgctttgcctttgagggccataagctcatcgcccactggtttaga
ggctaccttgtcattgtctcccgtgaccggaaggtttctcccaagtcggagtttaccagc
agggactcacagaactctgacaagcaaattctcaacatctatgacctgtgcaacaagttc
atagcctacagcgctgtttttgaggatgtagtggatgtgctcgctgagtggggctccctg
tacgtgctgaccagggatgggcgggtccacgcattgcaggagaaggacacacagaccaaa
ctggagatgctgtttaagaagaatctctttgagatggcaattaacctggctaagagtcag
catctggacagtgatgggctagctcaaatcttcatgcagtatggagaccatctctacagc
aaaggcaaccatgatggggctgttcagcagtatatccgaaccattgggaagttggagccg
tcctatgtgatccgtaaatttctagatgcccaacgcatccacaacctgactgcctaccta
caaactctgcatcggcaatctctggctaatgccgatcacaccaccctgctcctgaactgc
tataccaagctcaaggacagctcgaagctggaggaattcatcaagacgaagagcgagagt
gaagtccactttgatgtggagacagccatcaaggtcctccggcaggctggctactactcc
catgccctttatctggctgagaaccacgcacatcatgagtggtacttaaagatccagcta
gaggacattaagaactatcaggaagcccttcggtatatcggcaagctgccttttgagcag
gcagagagtaacatgaaacgctatggcaagatcctcatgcaccacataccagagcagaca
acccagttgctgaaaggcctctgtactgactatcggcccagtctggaaggccgaggcgat
cgggagtttccaagctgccgggccaactccgaggagttcatccccatctttgcaaacaac
ccaagagagctgaaagccttcctggagcacatgagcgaagtgcagccagactcaccccag
ggcatctatgacacgctcctggagctacggctgcagaactgggcccatgagaaggatcca
caggccaaggagaaacttcatgcagaggccatctccctgctgaagagtggccgattctgt
gatgtgtttgacaaggcattggtcctgtgccagatgcatgacttccaggatggggtcctt
tacctctatgagcaggggaagctgttccagcagatcatgcattaccacatgcagcacgag
cagtatcggcaggtgattgctgtgtgtgaacgccatggggagcaggagccctccctgtgg
gagcaggccctcagctacttcgcccgcaaggaggaagactgcaaggagtatgtggcagcc
gtgcttagacacatcgagaacaagagcctgatgccacctctcctggtggtacagacgctg
gcacacaactccacagctactctgtccatcatccgagattacctggtccaaaaactgcag
aaacagagccagcagattgcacaggatgagcttcgggtgcggcggtacagagaggagacc
actcgcatccgccaggaaatccaagagctcaaggcgagtccaaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagctgccttcagtccacttcctgtgtggccac
tccttccaccaacactgctttgagagctactcagaaagtgatgctgactgccccacctgc
ctccctgagaatcggaaggtgatggatatgatccgggcccaggaacagaaacgagatctc
catgatcaattccagcatcagctcaagtgctcgaatgacagcttctccgtgattgcggac
tactttggccgaggggttttcaacaagctgactctgctgaccgatccccctacagccaga
ctgacccccagcctggaggctgggctacagcgggacctgctgatgcactccaggagggga
acgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (38)   

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