KEGG   Rattus norvegicus (rat): 315639
Entry
315639            CDS       T01003                                 
Symbol
Usp28
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 28
  KO
K21122  ubiquitin carboxyl-terminal hydrolase 28 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    315639 (Usp28)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    315639 (Usp28)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     315639 (Usp28)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   315639 (Usp28)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    315639 (Usp28)
SSDB
Motif
Pfam: UCH UIM UBA_4
Other DBs
NCBI-GeneID: 315639
NCBI-ProteinID: NP_001101614
RGD: 1311555
Ensembl: ENSRNOG00000007325
UniProt: D3ZJ96 A0A0H2UI12
Position
8:58222258..58282711
AA seq 1079 aa
MTAELQQDDAAGAADGHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD
QRVKEPSHDTAATEPSEVEESATSKDLLAKVIDLTHDNKDDLQAAIALSLLESPNIQTDS
RDLNRIHEANSAETKRSKRKRCEVWGENHNPNNWRRVDGWPVGLKNVGNTCWFSAVIQLP
EFRRLVLSYSLPQNILENCRSHTEKRNIMFMQELQYLFALLLGSNRKFVDPSAALDLLKG
AFRSSEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRTKSENPMVQLFYGTFLTEGVRE
GKPFCNNETFGQYPLQVNGYHNLDECLEGAMVEGDIALLPSDRSVKYGQERWFTKLPPVL
TFELSRFEFNQSLGQPEKIHNKLEFPQVIYMDRYMYKSKELIRSKRESIRKLKEEIQVLQ
QKLERYVKYGSGPSRFPLPDMLKYVIEFASTKPASESCLSGSVEHMTLPLPSVHCPISDL
TAKESSSPKSCSQNAEGSFSSPEDALPNSEVMNGPFTSPHSSLEMPAPPPAPRTVTDEEM
NFVKTCLQRWRSEIEQDIQDLKNCISSTTQAIEQMYCDPLLRQVPYRLHAVLVHEGQASA
GHYWAYIYNQPRQIWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCSAE
AAHGESDQTAEVEALSVELRQYIQEDNWRFEQEVEEWEEEQSCKIPQMESSPNSSSQDFS
TSQESSAASSHGVRCLSSEHAVIAKEQTAQAIANTAHAYEKSGVEAALSEVMLSPAMQGV
LLAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAP
KRVVERTLLEQFADRNLSYDERSISIMKVAQAKLMEIGPEDMNMEEYKRWHEDYSLFRKV
SVYLLTGLELFQKGKYQEALSYLVYAYQSNAGLLVKGPRRGVKESVIALYRRKCLLELNA
KAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGKDI
AENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK
NT seq 3240 nt   +upstreamnt  +downstreamnt
atgactgcggagctgcagcaggacgacgcggcgggggcggcggacggccatggctcgagc
tgccagatgctgttaaatcagctgcgagaaatcacgggcatccaggatccttcctttctt
catgaagcattaaaggccagtaatggtgacatcacccaggctgtcagccttctcacagac
caaagagttaaggagcccagtcacgacacagctgctacagaaccatctgaagtagaagag
agtgctaccagcaaagatctcttagcaaaagtgatagaccttacacatgacaacaaagat
gaccttcaggcagccattgccttgagtctcctggagtctcctaacattcagactgacagc
agagatcttaatagaatacatgaagctaactctgcagagactaaacgatcaaagagaaaa
cgctgtgaagtttggggagaaaaccacaatcccaataactggaggagagtggatggttgg
ccagttgggctgaaaaatgttggcaacacatgttggttcagtgctgttattcagttgcct
gaatttcgaagacttgttctcagttacagcctgccacagaacattcttgaaaattgtcga
agtcacactgaaaaaagaaatatcatgtttatgcaagagcttcagtatttatttgctctg
ttattgggatcaaatcggaaatttgtagatccttctgctgccctggatctactgaagggg
gccttccgatcctcagaggagcaacagcaagatgtgagtgaattcacacacaagctcctg
gattggctggaggatgcgttccagctagctgttaatgttaacagcaatcccaggactaaa
tctgaaaaccccatggtgcagctgttctacggtaccttcctgacagaaggggtccgagaa
ggaaaacccttttgtaacaacgagaccttcggccagtaccctcttcaggtaaacggttac
cacaacttagacgagtgtttggaaggggccatggtggaaggtgacattgcgctgcttcct
tctgatcgctcagtgaaatacggacaagagcgttggtttacaaagctgcctccagtgttg
accttcgaactctccagatttgagtttaatcagtctcttgggcagcctgagaaaattcat
aataagctggaatttcctcaggttatttatatggataggtacatgtacaaaagcaaagag
cttatccgaagtaagagagagagcattcgaaagttgaaggaggaaatacaagttctgcag
cagaaattagaaaggtatgtgaagtacggctccggtccatctcgcttcccactccccgac
atgttgaaatacgttattgaatttgccagtacaaaacctgcctctgaaagctgtctgtct
ggaagtgttgagcatatgacgttaccacttccttctgtgcactgcccgatttctgacctc
acagccaaggaaagttcaagtcccaaaagctgctctcagaatgctgagggttccttttcc
tctccggaagatgctctacccaactctgaggtaatgaatgggccatttacttctcctcac
tcttccctggaaatgcctgcacccccaccagctcctcggacagtcacagatgaggaaatg
aatttcgttaagacctgtcttcagaggtggcggagtgaaattgaacaggatatacaagac
ttaaagaattgtatctcgagcaccacccaggctattgagcagatgtactgtgatcctctt
cttcgtcaggtgccttatcgcttacatgcagttcttgttcatgaaggacaagccagtgca
gggcactactgggcgtacatctataaccagccccggcagatctggctcaaatacaacgac
atctctgtcactgagtcttcctgggaagaacttgaaagagattcttacgggggcctgaga
aatgtcagcgcatactgcttgatgtatatcaatgacaagttgccccactgcagtgcagag
gcagcgcatggtgaatctgatcagactgcagaagtggaagccctgtctgtggaactcagg
cagtacattcaggaagataactggaggtttgagcaagaggtggaggaatgggaggaagaa
cagtcctgtaagatcccacagatggagtcctccccaaactcttcctcacaggatttttcc
acatcacaagagtcttcagcagcgtcctcgcatggcgttcgatgtttgtcttctgaacat
gctgtgattgcaaaggagcagactgcccaggccatcgcaaacacggctcatgcctatgag
aagagcggggtagaagcagccttgagtgaggtgatgctgagccctgccatgcaaggggtc
ctcctggccatagctaaggcgcgccagacctttgaccgagacgggtctgaagcagggctt
attaaggcatttcatgaagagtactccaggctctatcagcttgccaaagagacacccacc
tctcacagtgatcctcgccttcagcatgttctcgtctactttttccaaaatgaagcaccc
aagagggtagtagaacgaacccttctggaacagtttgcagatagaaaccttagctatgat
gagagatctatcagtatcatgaaggtggctcaggccaaactgatggaaattggtccagag
gacatgaacatggaagagtataagaggtggcatgaagactatagtctgttccgaaaggtg
tctgtgtacctgctaacgggcctggaactcttccaaaaaggaaagtaccaggaagctttg
tcctacctggtgtacgcgtaccagagcaatgctggcctgctggtgaaggggccccgcagg
ggcgtgaaggagtctgtgattgctttgtaccgcagaaaatgccttctggagttgaatgcc
aaggctgcttctctttttgaaacaaatgacgaccattctgtaacagagggcattaatgtg
atgaatgagctgatcattccctgcatccacctgatcattaataatgacatttccaaggac
gaccttgatgccatcgaggtcatgaggaaccactggtgctcttacctggggaaggacatc
gcagaaaatctgcagctgtgtttaggggagttcctacccaggcttctagatccttccgca
gaaatcatcgtcctaaaggagcctccaactattcgaccgaattctccctatgatctttgc
agccggtttgcagctgtcatggagtccattcaaggagtttcaacagtaacagtgaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (16)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (13)   
DNA sequence (15)   
   RefSeq(nuc) (13)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (46)   

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