KEGG   Rattus norvegicus (rat): 315691
Entry
315691            CDS       T01003                                 
Symbol
Lingo1
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 precursor
  KO
K23533  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    315691 (Lingo1)
Membrane trafficking [BR:rno04131]
 Endocytosis
  Lipid raft mediated endocytosis
   RhoA-dependent endocytosis
    315691 (Lingo1)
SSDB
Motif
Pfam: LRR_8 LRR_5 LRR_4 I-set Ig_3 ig Ig_2 LRR_9 LRRNT V-set
Other DBs
NCBI-GeneID: 315691
NCBI-ProteinID: NP_001094192
RGD: 1308668
Ensembl: ENSRNOG00000017193
UniProt: G3V881 A6J4R0 Q562A6
Position
8:complement(65907275..66089485)
AA seq 620 aa
MQVSERMLAGGMRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRK
RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN
LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV
YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR
LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIG
TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGN
LETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFT
CRRAHIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG
TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGE
ANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPR
KSDAGISSADAPRKFNMKMI
NT seq 1863 nt   +upstreamnt  +downstreamnt
atgcaggtgagcgagaggatgctggcagggggtatgagaagcatgcccagccccctcctg
gcctgctggcagcccatcctcctgctggtcctgggctctgtgctgtcaggctccgccacc
ggctgcccgccccgctgcgagtgctcagcgcaggaccgagcagtgctctgtcaccgcaag
cgctttgtggcggtgcccgagggcatccccaccgagactcgcctgctggacctgggcaaa
aaccgcatcaagacactcaaccaggacgagtttgccagtttcccacacctggaggagcta
gaactcaatgagaacattgtgagcgctgtggagccgggcgccttcaacaacctcttcaac
ctgaggacgctggggcttcgcagcaaccgcctgaagctcatcccgctgggcgtcttcacc
ggcctcagcaacttgaccaagctggacatcagcgagaacaagatcgtcatcctgctagac
tacatgttccaagacctatacaacctcaagtcgctggaggtcggcgacaatgacctcgtc
tacatctcccatcgagccttcagcggcctcaacagcctggaacagctgacgctggagaaa
tgcaatctgacctccatccccactgaggcactctcccacctgcatggcctcatcgtcctg
cggctacgacacctcaacatcaatgccatacgggactactccttcaagaggctgtaccga
ctcaaggtcttagagatctcccactggccctacctggacaccatgacccccaactgcctc
tacggcctcaacctgacatccctatctatcacgcactgcaacctgacagccgtgccctat
ctggcagtgcgccacctggtctatctccgtttcctcaatctttcctacaaccccatcggt
acaatcgagggctccatgctgcatgagctgctgcggttgcaagagatccaactggtgggc
gggcagctggccgtggtggagccctacgcctttcgtgggctcaattacctgcgtgtgctc
aatgtttctggcaaccagctgaccaccctggaggagtcagccttccactcggtgggcaac
ctggagacgctcattctggactccaacccactggcctgtgactgccggctgctgtgggtg
ttccggcgccgctggcggctcaacttcaacaggcagcagcctacctgcgccacacctgag
ttcgtccagggcaaggagttcaaggacttccccgatgtgctcctacccaactacttcacc
tgccgccgggcccacatccgggaccgcaaggcacagcaggtgtttgtagatgagggccac
acggtgcagttcgtatgccgggcagatggcgaccctccaccagctatcctttggctctca
ccccgcaagcacttggtctcagccaagagcaatgggcggctcacagtcttccctgatggc
acgctggaggtgcgctacgcccaggtacaggacaacggcacgtacctgtgcatcgcagcc
aatgcaggcggcaacgactccatgcccgcccacttgcatgtgcgcagctactcgcctgac
tggccccatcaacccaacaagaccttcgccttcatctccaaccagccaggcgagggagag
gccaacagcacccgcgccactgtgcctttccccttcgacatcaagacgctcatcatcgcc
accaccatgggcttcatctccttcctgggcgtggtcctattctgcctggtgctgctgttt
ctatggagccggggcaaaggcaacacaaagcacaacatcgaaattgaatatgtgccccgg
aaatcggacgcaggcatcagctcagctgatgcaccccgcaagttcaacatgaagatgata
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   UniProt (3)   
   RefSeq(pep) (8)   
DNA sequence (16)   
   RefSeq(nuc) (10)   
   GenBank (3)   
   EMBL (3)   
Protein domain (10)   
   Pfam (10)   
All databases (52)   

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