KEGG   Rattus norvegicus (rat): 315708
Entry
315708            CDS       T01003                                 
Symbol
Edc3
Name
(RefSeq) enhancer of mRNA-decapping protein 3
  KO
K12615  enhancer of mRNA-decapping protein 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    315708 (Edc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    315708 (Edc3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     315708 (Edc3)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     315708 (Edc3)
SSDB
Motif
Pfam: Edc3_linker FDF YjeF_N LSM14 DUF5096
Other DBs
NCBI-GeneID: 315708
NCBI-ProteinID: NP_001386245
RGD: 1306898
Ensembl: ENSRNOG00000019579
Position
8:67002032..67047563
AA seq 506 aa
MDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITEL
KILEIPGPGDNQQFGDLHQTELGPSGVGYQMSINQNGTGKVVKKPASSSSAPQSIPKRTD
MKSQDVAISPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKNG
QMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGSRSRGVPNERPA
RYRHDENILESEPIVYRRITVPHSVSKEFCTDSGLVVPSVSYELHKKLLSVAEKHGLTLE
RRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDV
QVILFLPNFVKMLESITNELSLFSKTQGQQVSSLRDLPTSPVDLVINCLDCPENAFLRDQ
PWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRVYLCDIGIP
QQVFQEVGIDYHSPFGCKFVIPLHSA
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggattggctaggcagtattgtgtctatcaactgtggagatagcctgggcgtctaccag
ggaagagtatcagcagtggatcaggtcagccagaccatttctcttactcggcccttccat
aatggggtgaagtgtcttgtaccagaagtcaccttccgggcaggtgatattacagaatta
aaaatcttggagataccaggtcctggagacaaccagcagtttggagaccttcatcagaca
gaattaggcccttctggtgttgggtaccaaatgagtatcaatcagaatggaacaggcaag
gtggtcaagaagccagcctcttccagtagtgcccctcagagcatccctaagaggacagat
atgaagagccaggacgttgccatttctcctcagcagcagcagtgctcaaagagttatgtg
gacaggcacatggagtctttgagtcagtccaagagcttccgtcgtcggcacaactcctgg
tcatctagtagcaggcacccaaaccaagcaaccccaaagaaaagtggtttaaaaaatggc
caaatgaagaataaagatgatgagtgctttggagacgacattgaggagatcccagatact
gattttgactttgaggggaacctagccctttttgacaaggcagctgtgtttgaggagatc
gacacttacgagaggagaagtggttcccgttctcggggtgtcccaaatgaacggcccgct
aggtaccgtcatgatgaaaacatcctggaatcggagccaatcgtgtaccgtaggatcaca
gttccacacagtgtgagcaaggagttctgcacagactctggcctggtagtcccaagtgtt
tcctatgagctacataaaaaactgttgtctgtggccgagaagcatgggctgaccctagag
cggagacttgagatgactggtgtgtgtgccagtcagatggccctgactctccttggagga
cccaacaggttgaatcctaagaatgtccaccagaggcctacagtagctctgctgtgcggg
ccccatgtgaagggggctcagggtatcagttgtgggaggcacctagccaaccatgatgta
caagtcatcctctttctgcccaactttgtcaagatgctggagtctattaccaatgaactg
tctctcttcagcaagacccaaggtcagcaagtgtccagcctaagagatctccccaccagc
cctgtggacctggttatcaactgcctggattgtcctgagaatgccttcctgcgggatcag
ccctggtacaaggcagctgtggcctgggccaaccagaaccgggcaccagtgctcagcata
gaccctcctgtacatgaagttgaacagggcattgatgccaaatggtccctggccctgggc
ctgccgctgccgctcggggagcacgcaggtcgagtctatctgtgtgacattggcattccc
cagcaagtcttccaggaggtcggcattgactaccactcaccctttggctgcaagtttgtc
attcccctacactctgcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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