KEGG   Rattus norvegicus (rat): 316034
Entry
316034            CDS       T01003                                 
Symbol
Cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
  KO
K12607  CCR4-NOT transcription complex subunit 10
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    316034 (Cnot10)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    316034 (Cnot10)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     316034 (Cnot10)
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_19 TPR_12 TPR_8 TPR_14 TPR_MalT TPR_7 TPR_16 DUF948 DUF6058
Other DBs
NCBI-GeneID: 316034
NCBI-ProteinID: NP_001007004
RGD: 1359219
Ensembl: ENSRNOG00000052305
UniProt: Q5XIA4
Position
8:complement(123158675..123208389)
AA seq 744 aa
MAADKPADQGAEKHEGAGQSSGVTDQEKELSTSAFQAFTSGNYDACLQHLACLQDINKDD
YKIILNTAVAEFFKNNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVIL
YHLRQHTEAIAVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTHQAEKALHLLAVLEKMIS
QGSGNKNGKSETGNNSSKDGSNPKAESAALIEAAKSKIHQYKVRGYIQMKSLKACKREIK
SVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLG
CIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGNTDPGKKFSGRPMCTLLANKRYELLYN
CGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPTKKGI
VQSIVGQGYHRKIVLASQSIQNTVYNDGQSSAIPVASVEFAAICLRNALLLLPEEQQDPK
QENGSKSSSQLGGNAESSESSETCSSKSHDGDKLIPAPPSSPLRKQELENLKCSILACSA
YVALALGDNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
DVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYD
KARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIKRNQLLPAVKAHSDVRK
KTVFQPVHPIQPIQMPAFTTVQRK
NT seq 2235 nt   +upstreamnt  +downstreamnt
atggctgcagacaagcctgcagatcagggagcagagaaacacgaaggggcaggccagtca
tctggggtcactgaccaggagaaggagctgtccaccagtgctttccaggccttcacatct
ggaaattatgatgcctgtctgcaacaccttgcctgtctgcaagatataaacaaagatgat
tacaaaattattctgaatacagcagtagctgaattttttaaaaataatcaaacaacaaca
gataatttgagacaaacacttaaccagctgaagaatcaggtccactcagctgtggaagag
atggatgggttagacgacgttgagaacagcatgctgtattataaccaagcagtcattctc
tatcatctgcggcagcacacggaggccatagctgttggtgaaaaactttatcagttcata
gaacctttcgaagaaaaatttgcccaagcagtgtgctttctgctcgtagacttgtatata
ttaacccaccaagctgagaaagcgctgcatcttcttgccgtcctagaaaagatgatttca
cagggtagcgggaacaaaaacgggaagagcgagactggcaataacagcagcaaagacgga
tccaatcctaaggctgagagtgcagcgctgatagaggctgccaagtccaagatacaccag
tacaaagtcagagggtacatccagatgaagtcgctgaaggcatgcaaaagggagatcaag
tctgtcatgaacacagctggaaattccgcaccttccctgtttcttaaaagcaactttgag
tacttaaggggcaattatcgaaaagcagtgaagctgttaaatagttcaaacattgccgag
catccaggcttcatgaaaacaggtgagtgcttgagatgcatgttctggaataatcttggt
tgtatccattttgccatgagcaagcacaatttggggattttctacttcaagaaggctctg
caggaaaatgacaatgtctgcgcccagctcagtgcgggtaacaccgatccaggcaaaaag
ttttctggaagacccatgtgtacattgctggccaacaaaaggtacgagctgctgtacaac
tgtgggatccagctgctgcacgtcgggaggcctcttgctgcctttgagtgtctggttgaa
gctgttcaggtgtaccacgcgaatcctcgtctttggctccggctggctgagtgctgcatt
gctgccaataaagggacttctgagcaagaaaccaaaggtcttcccacaaaaaagggaatt
gtacagtctattgttggtcaagggtatcaccgtaaaatagttctggcgtcacagtctatt
cagaacactgtctacaacgatgggcagtcttcagccattcctgtagccagtgtggagttt
gcagccatctgtctcagaaatgccttgttgctgttacctgaagagcagcaagatccaaag
caggaaaacggctccaagagcagcagccaacttggaggaaatgcggaaagcagcgagagc
agtgagacgtgcagcagtaaaagccatgatggagataagctcattcctgctccaccgtct
tctcccctgaggaaacaggagttagaaaacctcaagtgctccatccttgcttgcagtgct
tatgtggccctggccttaggtgacaacctcatggcgttgaaccatgcagatcagctcctg
cagcagcccaagctgtctggctctcttaagtttttgggccatttatatgccgcagaagcc
ctcatctccctcgacagaatatctgatgccattacgcacttgaacccagagaatgtcact
gatgtctctttaggaatctcttcaaatgaacaggaccaaggatcagacaagggtgaaaat
gaagcaatggaatcctctggcaaacgcgcccctcagtgctaccccagttctgtcaactct
gcccggactgtgatgctcttcaacctgggcagtgcgtactgcctgaggagcgagtatgac
aaggcccgcaagtgtctgcatcaggcggcatcaatgatccatcctaaagaggtgccccct
gaggccatcctgctggcggtctaccttgagctgcagaatggtaacacgcagctggccttg
cagatgatcaaacggaaccagctgctccctgcagtaaaggcgcactccgatgtgaggaag
aagacagtattccagcctgtgcaccccatccagcccatccagatgccggcattcaccacg
gtacagaggaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (19)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (17)   
DNA sequence (21)   
   RefSeq(nuc) (17)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (61)   

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