KEGG   Rattus norvegicus (rat): 316098
Entry
316098            CDS       T01003                                 
Symbol
Exosc7
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    316098 (Exosc7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    316098 (Exosc7)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     316098 (Exosc7)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     316098 (Exosc7)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 316098
NCBI-ProteinID: NP_001094195
RGD: 1309758
Ensembl: ENSRNOG00000060337
UniProt: G3V6K3 A6I4B2 Q5EB65
Position
8:131650988..131676399
AA seq 291 aa
MASVSLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV
GVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVD
LRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI
ELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMR
KVGKGSLDPESIFEMMESSKRVGKVLHMSLQSLLHKEESLGPKRPKVGFLG
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcgtcggtgtcgctaagcgaggctgagaaggtctacatcgttcatggagtgcaggaa
gaccttcgggtggatggccgtggctgtgaggactaccgatgtgttgaagtagagactgat
gtggtgtctaacaccagtgggtctgccagagtcaagctgggtcatacagacatcttggtg
ggagtgaaagcagagatggggacaccgaagctggagagaccaagcgaaggctacctggag
ttctttgttgactgttcagccaatgctaccccagaattcgaagggcgaggaggtgatgac
ctcggcacagagattgcaaataccctctaccggatatttaacaacaagagcagcgtcgac
ctgaggtccctctgcatcagtcctcgggagcactgctgggtgctgtatgtggacgtgctg
ctgctggaatgtggtgggaatttgttcgatgctatttccattgctgtgaaagctgctctc
ttcaacacaaggataccaagggttcgtgttctggaggatgaagaagggtcgaaggacatt
gagctgtctgatgatccttatgactgcatccgactgagtgtggagaatgtcccctgcatt
gtcaccctatgcaagattggctgccggcatgtggtggatgccacacttcaagaggaggcc
tgttccctggccagcttgctggtgtcggtgaccagcaaaggagtcgtgacatgcatgagg
aaagtggggaaaggaagcctggatcctgagagtatcttcgagatgatggagagcagcaag
cgagtgggcaaagtgctacacatgtccttgcagagtctcctgcacaaggaagaaagtctg
gggcccaagaggccaaaagtcgggttcctggggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (3)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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