KEGG   Rattus norvegicus (rat): 316101
Entry
316101            CDS       T01003                                 
Symbol
Limd1
Name
(RefSeq) LIM domain-containing protein 1
  KO
K16682  LIM domain-containing protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04390  Hippo signaling pathway
rno04392  Hippo signaling pathway - multiple species
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04390 Hippo signaling pathway
    316101 (Limd1)
   04392 Hippo signaling pathway - multiple species
    316101 (Limd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    316101 (Limd1)
   03036 Chromosome and associated proteins [BR:rno03036]
    316101 (Limd1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     316101 (Limd1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Sister chromatid separation proteins
   Aurora kinases
    Regulators of Aurora kinases
     316101 (Limd1)
SSDB
Motif
Pfam: LIM DUF35_N
Other DBs
NCBI-GeneID: 316101
NCBI-ProteinID: NP_001106208
RGD: 1309830
Ensembl: ENSRNOG00000004837
UniProt: B5DEH0
Position
8:131998262..132045924
AA seq 663 aa
MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGASNNPEFEETRRVFATKMAKIHLQQQ
QQQQLLQEEALPRAGRSPINGGNRQGVSSKLAADGAAKPPLAVPTVAPGLATTTMAVQSS
YPPQEQRTRPSAHGARPGSQNCGSREGPVSSQRPALHGLGPCEDPSCLTHGDYYDNFSLA
SPQWGDKPEESPSMSLSVGSGWPGCPGNDSLSHRSCGDSHPYHPQLSMCSGRSFESGQDS
GIGGHSSEKPTGLWSTASSQRVNLGFSSTGLENGTPAQPKGTTVSAPMVPSSTSQGACLR
RDSSLGYEAPGRVFKPLVDTQPWLQDGPKSYLSVSAPLSSTTSKDNAQTGMTAGLDPKLG
CVESGTSPKPSPTSNVHPVMSAPSELSCKESPPSWSTDSSLGPVLPESPTPSRVRLPCQT
LTPGPELGPSTAELKLEALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGDLY
HDACFTCAACSRKLRGKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDMILQALG
KSYHPGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDET
IRVVSMDRDYHVECYHCEDCGLELNDEDGHRCYPLEDHLFCHSCHVKRLEKGPSPASLHQ
HHF
NT seq 1992 nt   +upstreamnt  +downstreamnt
atggataaatatgatgatctgggccttgaggccagtaagttcattgaggacctgaacatg
tacgaggcctccaaggatgggctcttccgggtggacaagggtgctagcaacaaccccgaa
tttgaggaaactcgaagggtgttcgcgaccaagatggccaaaatccacctccagcagcag
caacagcagcagctcctacaggaggaggccctacctagggcaggcagaagccccatcaac
ggtgggaaccgtcagggtgtgagcagcaagctggctgcagatggggccgctaagcctcct
cttgctgtgccaacagtagcacctggactagctaccaccactatggcggtgcagtcctca
tacccacctcaggagcagaggaccaggccatctgcccacggtgcaaggcctggcagtcag
aactgtggttccagggaggggcctgtgagttcccagagacctgctttacacggtctgggt
ccctgtgaagacccttcctgcctcactcacggagactattacgacaatttctctttggca
agcccacagtggggtgataaaccagaagagtcccctagcatgagtttgagtgtagggagt
ggatggcctggttgcccaggaaatgattccctgtcgcacagatcctgtggggacagtcat
ccttaccacccacagctctccatgtgctctggcaggtcttttgaaagtggtcaggacagt
ggcattggtggccatagcagtgagaagccaacaggcctttggtccactgcctcctctcag
agagtgaacctgggcttttcttccacgggcttggagaatgggaccccagctcaacccaag
ggcacaaccgtttcagcaccaatggtccctagcagcactagccaaggcgcttgtctgaga
agagattcgagtctgggatatgaggctccaggcagggtcttcaaacctcttgtggacact
cagccttggctccaggatgggcccaagtcgtacctctctgtttctgctccactatcctca
acaaccagcaaggacaatgcccagacaggtatgaccgctggactggatcctaagcttgga
tgtgtggagtctggcactagtcccaagcccagccccaccagtaacgtccatccggtaatg
tctgctccgtctgagttatcttgtaaagagagtcctcccagctggtccactgacagtagc
ctgggacctgtgctcccagagagccccaccccctccagggtgaggttgccctgccagacc
ctcacgccaggccccgagcttggaccctccactgcggaattgaagttggaagccctcacc
cagcgtctggagcgagagatggatgctcaccccaaagcagactacttcggagcctgtgtg
aaatgcagcaaaggggtgtttggagctggccaggcctgtcaggccatgggggatctctac
cacgatgcctgcttcacctgtgcagcctgcagcaggaagttaagaggaaaggccttctat
tttgtcaatggcaaagtattctgtgaggaagactttttgtactctggctttcagcagtct
gcggacagatgttttctttgtggacacctgattatggacatgatcctacaggccctaggg
aagtcctatcaccctggctgtttccgctgcgtcatctgcaatgagtgtctagatggggtt
cctttcaccgtggactctgagaacaagatctactgtgtccgagattatcacaaggtgctg
gcccccaagtgtgcagcctgtggccttcccattcttccaccagagggctcagatgagacc
atcagagttgtgtccatggaccgagactaccatgtagagtgctaccactgtgaggactgt
ggtctggagctcaatgatgaggatggtcaccgctgctatccactggaggaccacctgttc
tgtcactcctgccatgtcaagagactggagaaaggaccctcacctgcatccctccaccag
caccacttctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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