KEGG   Rattus norvegicus (rat): 316123
Entry
316123            CDS       T01003                                 
Symbol
Gtf2f1
Name
(RefSeq) general transcription factor IIF subunit 1
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    316123 (Gtf2f1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    316123 (Gtf2f1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     316123 (Gtf2f1)
SSDB
Motif
Pfam: TFIIF_alpha
Other DBs
NCBI-GeneID: 316123
NCBI-ProteinID: NP_001007712
RGD: 1359646
Ensembl: ENSRNOG00000047134
UniProt: Q6AY96
Position
9:complement(1931033..1940197)
AA seq 508 aa
MAALGSSSQNVTEYVVRVPKNTAKRYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEE
EMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGGVTE
NTAYYIFTQCADGAFEAFPVQNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQR
RLKDQDQDEDEEEKEKRSRKKPSELRIHDLEDDLEMSSDASDASGEEGSRASKAKKKAPV
TKAGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSPDEAEGKPKVPQQEDGPKG
VDEQSESSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSDDSDSSEESDIDSETSSA
LFMAKKKTPPKRERKPSGGSSKGTSRPGTPSAEAASTSSTLRAAASKLEQGKRTSETPAA
KRLRMDTGPQSLSGKSTPSSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQT
VNVLAQILKRLNPERKMIGDKMHFSLKE
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggcggctctaggctccagcagccagaatgtcactgagtacgtcgtccgagtccccaag
aacacagccaaaagatacaacataatggcttttaatgcagctgataaagtcaactttgct
acctggaaccaggcacggctggagcgagatctgagcaacaagaagatctaccaggaagag
gagatgccagagtctggtgcaggaagtgaattcaaccgcaagctcagggaggaggctcgc
cggaagaagtatggcatcgtcctgaaggagttccggcctgaggaccagccctggctactc
cgtgtcaatggcaaatcggggaggaagttcaagggcatcaagaaaggcggggtaacagag
aacacggcctactacatcttcacacagtgtgcggatggcgccttcgaggccttccctgtg
cagaactggtacaatttcacaccgctggcccgacaccgcacactgactgctgaggaagct
gaggaggaatgggagaggaggaacaaggtcctgaaccacttcagcatcatgcagcagcgg
cgactcaaggaccaggaccaggatgaagatgaggaggagaaggagaagcgcagccgtaag
aagcctagtgaactgcgcattcatgacctggaagatgacctggaaatgtcatccgatgcc
agtgatgccagtggagaagagggcagcagagcctccaaggctaagaaaaaggccccagtg
accaaggcaggcaggaagaagaaaaagaagaagggctcagatgatgaggcctttgaggac
agtgatgacggggactttgagggccaggaggtagactacatgtctgacggctccagcagc
tcaccggatgaggcagagggcaagcccaaggtgccccagcaggaggatggccccaagggt
gtggacgaacagagtgagagcagtgaggagagtgaggaggagaagccccccgaggaggac
aaggaggaggaggaagagaagaaggcccctaccccacaagagaagaaacgcaggaaagac
agcagtgatgactcagacagctcagaagagagcgacattgacagtgagacctcctctgcg
ctcttcatggcgaagaagaagacaccccccaagagggagcggaagccatccgggggaagt
tcaaagggcaccagccggccaggaactcccagtgcagaagcggcaagcacctcttctacc
ctgcgggccgcggccagcaagctggaacaggggaagcggacaagtgagactccagcagcc
aagcgccttcggatggacacaggtccccagagcctgtctgggaagtccacgcccagcagc
ggtgatgtccaggtgacagaggatgctgtgcgccgctacctgacccggaagcccatgacc
acgaaggacctgctgaagaagttccagaccaagaagacggggctgagcagcgagcagaca
gtgaatgtgctggcgcagattctcaagcgcctcaaccctgagcgcaagatgattggggac
aagatgcacttctccctcaaagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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