KEGG   Rattus norvegicus (rat): 316214
Entry
316214            CDS       T01003                                 
Symbol
Tfeb
Name
(RefSeq) transcription factor EB
  KO
K15590  transcription factor EB
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04020  Calcium signaling pathway
rno04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04020 Calcium signaling pathway
    316214 (Tfeb)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    316214 (Tfeb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    316214 (Tfeb)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
   Ubiquitous bHLH-ZIP factors
    316214 (Tfeb)
SSDB
Motif
Pfam: MITF_TFEB_C_3_N DUF3371 HLH
Other DBs
NCBI-GeneID: 316214
NCBI-ProteinID: NP_001020878
RGD: 1309583
Ensembl: ENSRNOG00000014666
UniProt: Q4KLM8
Position
9:complement(20696440..20752265)
AA seq 535 aa
MAQLAQRSWANPFCPDSVSPYAQWEQPYLGQPTLKDSEDDEYFMDLSSLDCREPESTAAM
ASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQQLGGPPTPAINTPVHFQS
PPPVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETYGNKFAAHVSPAQGSPKPPPAA
SPGVRAGHVLSTSAGNSAPNSPMAMLHISSNPEKEFDDVIDNIMRLDSVLGYINPEMQMP
NTLPLSSSHLNVYSGDPQVTASLVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHN
LIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENH
SRRLEMTNKQLWLRIQELEMQARVHGLPTTSPSGVNMAELAQQVVKQELPSEDNPGETLM
LGSEVPDPEPMPALPPQAPLPSAAQPQSPFHHLDFSHGLSFGGGGDEGPAGYPDPLGTEH
GSPFPNLSKKDLDLMLLDDSLLPLASDPLFSTMSPEASKASSRRSSFSMEEGDVL
NT seq 1608 nt   +upstreamnt  +downstreamnt
atggctcagcttgctcagcggtcttgggcaaatcccttctgtccggactcagtttctcct
tatgcacaatgggagcaaccgtacttaggccagcccacgcttaaagactccgaggatgat
gagtacttcatggacctgtcttccctcgactgcagggagccggaatcaaccgctgccatg
gcgtcgcgcatcgggctgcgcatgcagctcatgcgggagcaggcgcagcaggaggagcag
cgagagcgcatgcagcagcaggccgtcatgcattacatgcagcagcagcaacagcagcag
cagcagcagctgggaggccctcccaccccagccatcaacaccccagttcacttccagtcg
ccaccaccagtgcctggggaggtgctgaaggtgcagtcctacctggagaaccccacctcc
taccacctgcagcagtctcagcatcagaaagtccgagagtacctgtccgagacctacggc
aacaagtttgctgcccacgtcagcccagcccaaggctccccgaagcctccaccagcagca
tcccctggggtgcgggctggacatgtactgtccacctcggccggcaacagtgcccccaac
agtcccatggccatgctacacatcagctccaatcctgagaaagagtttgatgatgtcatc
gacaacattatgcgcctggacagcgtgctgggctacatcaaccccgaaatgcagatgcct
aacacgctacccctgtccagcagccacctgaacgtgtacagtggtgacccccaggtcacg
gcttccctggtaggtgtcaccagcagttcctgccctgccgacctgactcagaagcgagag
ctaacagatgctgagagccgggccctggccaaggaacggcagaagaaagacaatcacaac
ttaattgagagaagacgcaggttcaacatcaatgacagaatcaaggagctgggaatgctg
atccccaaggccaatgacctggacgtgcgctggaacaagggcaccatcctcaaggcctct
gtggattacatccggaggatgcagaaagacctgcagaagtcccgggagctggagaaccac
tctcggcgcctggagatgaccaacaagcagctctggcttcgcatccaggagctggagatg
caggcacgcgtgcacggtcttcccaccacctcaccgtccggtgtgaatatggccgagctg
gcccaacaggtggtgaagcaagagctgcccagtgaagataacccaggggagaccctgatg
ctggggtccgaggtccctgaccctgagcccatgccggctctcccaccccaggccccgctg
ccctcagccgcccagccacagtctccgttccatcacctggacttcagccatggcctgagc
tttgggggtgggggcgatgaggggcccgcaggctaccctgatcccctggggacagagcat
ggctcccctttccccaacctgtccaagaaggatctggacttaatgctcctagatgactcc
ttgctccccctggcctctgatcccctcttttctaccatgtctcctgaggcctccaaggct
agcagccggcgaagcagcttcagcatggaggagggcgacgttctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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