KEGG   Rattus norvegicus (rat): 316219
Entry
316219            CDS       T01003                                 
Symbol
Trerf1
Name
(RefSeq) transcriptional-regulating factor 1
  KO
K26583  transcriptional-regulating factor 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    316219 (Trerf1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    MiDAC complex
     316219 (Trerf1)
SSDB
Motif
Pfam: zf-C2H2_6 ELM2 zf-C2H2_4 zf-C2H2 Myb_DNA-binding Myb_DNA-bind_7 zf-met zf-C2H2_2
Other DBs
NCBI-GeneID: 316219
NCBI-ProteinID: NP_001101669
RGD: 1307167
Ensembl: ENSRNOG00000022598
UniProt: A6JIL1
Position
9:complement(21131772..21355830)
AA seq 1120 aa
MGDQQLYKTNHVAHGGENLFYQQPPLGVHSGLNHSYGNTISGAGMDAPQASPISPHFPQD
TRDGLSLPIGSKNLGQMDASRQGGWGSHAGPGSHVQLRSNLANSNMMWGAPAQVEPTDGY
QYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGASDSA
LRQLLSQKPVEPSASAIASRYQQVPQQPHPGFTGGLPKPALPVGQHAPQGHLYYDYQQPL
AQMSVQGGQPLQAPQVLSSHMQPLQQHQYYPQPPPQQQQAGLQRLSVQEMQQQQQQQIRP
SPPQQQQQQQQQQQQQQLQLQQRQSSLQIPQYYQPQPMMQHLQEQQQPSMHLQPPSYHRD
PHQYTPEQAHAVQLIQLGSMPQYYYQEPQQPYGHPLYQQSHLSQHLQREDSQLKTYSSDR
QTPALLSSHGDMGPSDTGVADPASSEMTRVTSTLPHQPLLSPSGIHLNSMGSQHQQPSPS
AMWPQMHLPDGRAQPGSPESSGQTKGVFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSH
GGMRASPSLKQEIPRKHPPITAKVEEPLKTPPEKKKFRHRPEPLFIPPPPSSYTPNPTSY
SGATLYQSQLRSPRILGDHLLLDPAHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGVH
PQLPLTPLTPTPRVLLCRSSSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDV
SAMAQDTHKATLVWKPWPELENQALQQQVENLLNLCCSSALPGGGTNSEFALHSLFEAKG
DVMATLETLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVK
SKTVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCMTSEEEEDAEEEEEDPEEDRKSIKD
EESEVPKTPEPPPAPALAPTEGAPMQAGGQPSGSFICEMPNCGAVFSSRQALNGHARIHG
GTNQVAKTRGAVPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKI
KSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPELLPLDQLSLMKPKDV
DILDDDMVQQLGVMDEAEVVGTDLLLDNQDSVLLQGDTEL
NT seq 3363 nt   +upstreamnt  +downstreamnt
atgggggaccagcaactgtacaagaccaatcacgtggcccacggtggtgagaacctcttc
tatcaacagccaccccttggcgtgcacagcgggctgaaccacagctatgggaatacaatc
tcgggggctggaatggacgccccgcaggcctcacccatctctcctcacttccctcaagat
actcgggatggtctcagcttgcctattggctccaaaaaccttggccaaatggatgcctcc
aggcagggaggatggggaagccatgcaggacctgggagccatgtccagcttcgtagcaac
ttggccaactcaaacatgatgtggggggcgccggcccaggtggaacccacggatggctac
caatacacgtattcccaggccagcgagatccggacccagaaactcaccagtggtgttttg
cacaagctggactctttcacccaggtgtttgccaaccaaaacctgcgaattcaggtcaac
aatatggcccaggtgctgcacacccagtcagcagtgatggatggagcctctgacagtgcc
ctccgtcagctgctgtctcagaagcctgtggagccctcagcatcagccatagcttctcgc
taccagcaggtgccccagcagcctcaccctggtttcacaggtggactgcccaaaccagcc
cttccagtcgggcagcatgctccccaagggcacctgtattatgactaccagcagcccctg
gcccagatgtccgtgcaaggcggacagccactgcaagcccctcaggtgctgtccagccat
atgcagccattgcagcagcaccagtattacccacagccgccgcctcagcagcagcaagcc
ggactgcagcggctctccgtgcaggagatgcagcagcagcagcagcagcagattcgcccc
tcaccgcctcagcagcagcagcagcagcagcagcaacagcagcaacagcagctccaactg
cagcaacggcagagttcactgcagatacctcagtattatcagccccaacccatgatgcaa
cacttgcaagagcagcagcagccatccatgcacctgcagcccccttcgtaccacagggac
cctcaccagtataccccggagcaggcacatgcggtccagctgatccagctgggctccatg
ccccagtattactaccaggagcctcaacagccctacggtcaccccctctaccagcagagc
cacctgtcccagcacctgcagcgtgaagacagtcagctgaagacctactccagtgatagg
cagaccccagctctgctgagctctcacggggacatgggaccttctgatacaggggtggca
gatccagcaagctcagaaatgacccgggtcaccagtacccttcctcaccaaccgctcctg
tcccccagtgggatccacctcaacagcatgggatctcagcatcagcagccgtctcccagt
gcgatgtggccccagatgcacttacctgatgggagagcccagcctggatctccggaatca
agcggccaaaccaaaggagtgtttggggaacagtttgatgccaagaacaagctgacatgc
tccatctgcctgaaggagttcaaaagcctgcctgccctgaatggccacatgaggtcccac
gggggaatgagggcatcccccagcctcaaacaggaaatcccccggaaacatccgcccatc
accgccaaagttgaggagcccctcaagaccccaccagagaagaagaagttccggcaccgg
cctgagcccctcttcatcccaccaccgccttcttcctatactcccaaccccacctcttac
tcgggggccaccctgtaccagagccaactgcgctccccacgcatcctcggggaccacctg
ctcctggaccccgcccacgaactgcccccctacacaccgccacccatgctgagccccgtg
cgccagggctcagggctcttcagcaatgtcctcatctctggccacggccctggagtgcac
ccccagctgcccctcactcccctcacgcccacgccacgcgtgctgctgtgccgttccagc
agcatcgatggcagcaatgtgacagtcaccccaggacccggagaacagactgtggatgtt
gaaccacgcatcaacattggcttaagattccaagcagagatcccagaactgcaagacgtc
tccgccatggctcaggacacacacaaggccacactggtatggaagccgtggcctgagcta
gaaaaccaggccctccagcaacaagtggagaaccttctgaatttgtgttgttccagcgcg
ctgccaggtggagggaccaattcggaatttgctttgcactctctctttgaggccaaaggt
gacgtgatggctaccctggaaacgctgctgctgcggaagccagtcaggttaaaatgtcat
cctttagcaaactaccactacgccggttctgacaagtggacgtccctagaaagaaaactg
tttaataaagcattggccacttacagcaaagactttatttttgtacagaagatggtgaag
tccaagacagtggctcagtgcgtggagtactactacacttggaagaagataatgcggcta
gggcggaaacaccggacacgcctggcagaaatcattgacgactgcatgaccagcgaagag
gaagaggacgccgaagaggaggaagaggacccggaagaagataggaaatccataaaagat
gaggagagtgaagtacccaagacaccagagccaccgcctgcccctgccctggctcccacc
gagggggcacccatgcaggctggtggccaaccatcaggctccttcatttgtgagatgccc
aactgtggggctgtgttcagctcccgacaggcactgaatggccacgcccgcatccatggc
ggcaccaaccaggtggctaagacccgaggtgctgtcccctctgggaagcagaagccaggt
ggcacccagagtgggtattgctcagtgaagagttcaccatctcacagtaccaccagtgga
gagaccgaccccaccaccatcttcccctgcaaggagtgtggcaaggtcttctttaagatc
aaaagccggaatgcacacatgaaaacccaccggcagcaagaggagcagcagaggcagaag
gctcagaaggcagccttcgcggcagaaatggcagccaccatcgagaggactacggggccg
gtgggggcaccggagctgctgcctctggaccagctgagcctgatgaagcccaaggacgtg
gacatcctggatgatgatatggtccagcagttaggcgtcatggacgaggctgaggtggta
ggcacggatcttctcttggacaaccaagattcagttttgcttcagggtgatacagaactc
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (24)   
   UniProt (1)   
   RefSeq(pep) (23)   
DNA sequence (23)   
   RefSeq(nuc) (23)   
Protein domain (8)   
   Pfam (8)   
All databases (64)   

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