KEGG   Rattus norvegicus (rat): 316477
Entry
316477            CDS       T01003                                 
Symbol
Smarcal1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
  KO
K14440  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    316477 (Smarcal1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    316477 (Smarcal1)
SSDB
Motif
Pfam: HARP SNF2-rel_dom Helicase_C ResIII ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 316477
NCBI-ProteinID: NP_001101692
RGD: 1306134
Ensembl: ENSRNOG00000016503
UniProt: B4F769
Position
9:81689446..81735406
AA seq 910 aa
MSLPLTEEQRKKIEENRQKALARRAEKLWAEQPQSTASGSSAARPSQCKQNSLLNLPAEP
SKPEGHATISKGQNLNNSLPAAQRPHSSPCFQPSTAEEAKGLWKSEGKMSAACPNPSPPE
VSNQQLLGSKSSEGHPQATQDTAASCPRPFPRDPKLEAKAGRPSTSGQSISDTFYALGEK
TPKTDGRPAKALQTSPQKASCLRGMCLRTGDRFRVKIGYNKELIEVFKSLPSRRYDSFTK
TWDFSMSDYRALMKAVERLSTVSLQPLEEVDGTGGQTSLPSAPSLTFVTGRCMLISRARF
EVDIGYSEVVIALFKQMESRNYDPKTRKWNFLLEEHNKLIARSRELKQVQLDPLPKTLTL
AFASQLEKTSLQSKADVPEADLSGVDAKLVSNLMPFQREGVSFAISKRGRLLLADDMGLG
KTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPEDINVVVTGKGRLTAGL
VNIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNIKTARCRAAVPILKVAKRVILLSGTPA
MSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRLPWGWDYSGSSNLGELKLLLEEAVML
RRLKSDVLSQLPAKQRKMVVVNPGRISTRAKAALDAAAKEMTKDKTKQQQKEALLVFFNR
TAEAKIPCVIEYILDLLESGREKFLVFAHHKVLLDAIAKELERKNVQHIRIDGSTPSADR
EDLCQQFQLSKGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQT
NSVGIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATDYLYKDPKQKTIYS
LFQQSFEDDGNDMEFLEAAESFELGSTSGTSGNSSQELGDITDENALADSPPKKRRFEFF
DNWDSFTSPF
NT seq 2733 nt   +upstreamnt  +downstreamnt
atgtccttgccacttacggaggagcagaggaaaaagattgaagagaatcggcagaaggct
ttggcccgtcgagctgagaagctatgggcagaacagccccagagtacagcttcaggctcc
agtgctgccaggccgtcccagtgcaagcagaactctctcctgaatctcccagcggagcct
tcaaagccagagggccatgctaccatttccaagggacagaatctcaataattcactccct
gctgctcagagacctcacagctccccctgttttcaacccagcacagcagaggaagcaaag
ggactatggaagagcgaaggaaagatgtccgcagcctgcccaaacccaagtcccccagaa
gtctctaaccaacagcttttgggtagtaaatccagtgagggtcatccccaggcaacccag
gacacagcagcttcctgtcctagaccatttcccagggatcccaagttagaggccaaggca
gggaggccctccacctctggacagagcatttcggacaccttttatgccttaggggaaaaa
acacctaagacagatgggagacccgcaaaggcactgcagacctcaccccaaaaagcaagc
tgtctacggggaatgtgcttaaggacaggggatcgcttccgggtaaagatcggctacaac
aaggagctcattgaggtgtttaagtctctgcccagcagacgctatgattcgtttacgaag
acgtgggacttcagcatgagtgactacagagccttgatgaaggccgtcgagcgactctcc
acggtctcccttcagccattggaagaggtcgatggcactgggggacagaccagcctcccc
tcagctccatcccttacctttgtcacagggagatgcatgctcatttcccgagcccgcttc
gaggttgacatcggctattctgaggtggtgattgccctgtttaagcagatggagtccagg
aattacgatccgaagaccaggaagtggaactttctcttggaagagcacaataaactaatt
gcaaggtcccgtgagctcaagcaagtccagctggaccctctgcccaagaccttgaccctg
gcatttgcatctcagctggagaaaacgtctctccaatcgaaagcagatgtgccagaagct
gacctttctggagtggatgccaagcttgtgtctaacctcatgccctttcagagagaggga
gttagctttgccatatcaaaaagaggccgcctgctacttgccgatgacatgggcctaggg
aagaccatccaagccatctgcatagcagctttttaccgaaaggaatggccactgctggtg
gttgtgccttcctctgtgcgcttcacctgggagcaggcctttctgcgatggcttccatca
cttagcccagaggacatcaacgtggtggtgactgggaagggccgcctaacagctggcttg
gtcaacattgtcagctttgaccttctgagcaagttggagaagcagctaaaaacccctttc
aaagtcgtcattattgatgaatcgcacttcctcaaaaacatcaagactgcccgatgccga
gcagctgtgcctatcctaaaggttgccaagagggtgatcctgctgtcgggcacacctgcc
atgtcgaggcctgcagagctctacacacagatcattgctgtcaagccaaccttcttccct
cagtttcatgctttcggactgcgctactgtgatgccaagcggctcccttggggctgggac
tactcgggctcctccaacctgggtgagctgaagctgctgctggaggaggcagtcatgctg
cggcggctcaaatctgatgtcctttcccagcttccagccaagcaacgcaagatggtggtg
gtcaaccctggtcggatcagcaccagggctaaggcagccctggatgcagcagccaaagaa
atgaccaaggacaaaactaaacagcagcagaaggaagctctccttgtcttcttcaacaga
acagcagaagctaaaatcccatgtgtcatcgaatatatcctggaccttctggagagcggg
cgagagaagtttctagtgtttgcacaccataaggtgcttctggatgcgattgctaaggaa
cttgagaggaagaatgttcagcacatccgcattgatggctccacgccctctgcagaccgg
gaggatctgtgccagcagttccagctgtccaaaggacatacggtggcagtgttgtccatc
acagccgccaacatgggcctcaccttctcctcggctgatctggtggtgtttgctgagctg
ttttggaaccccggggtgttgatccaggccgaggaccgcgtgcaccgcattggacagaca
aactctgtgggcatccactacctggtggcaaaaggcaccgcagatgactacctctggcct
ctgattcaagagaagattaaagttctgggggaagctgggctttctgagaccaatttctca
gaaatgacagaagctactgactacctctacaaggacccaaaacagaagacgatctatagc
ctgttccagcagtccttcgaagacgatgggaatgacatggaattcctggaggcagcagag
tcctttgaactaggaagtacttcagggacctctggaaatagctcgcaggagctaggagat
atcacagatgagaacgccttggcagacagcccaccaaagaaaaggagatttgaattcttt
gataattgggacagctttacctctcccttttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (7)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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