KEGG   Rattus norvegicus (rat): 316599
Entry
316599            CDS       T01003                                 
Symbol
Usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40
  KO
K11869  ubiquitin carboxyl-terminal hydrolase 40 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    316599 (Usp40)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    316599 (Usp40)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     316599 (Usp40)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   316599 (Usp40)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    316599 (Usp40)
SSDB
Motif
Pfam: UCH UCH_1 DUF6084
Other DBs
NCBI-GeneID: 316599
NCBI-ProteinID: NP_001128357
RGD: 1309613
Ensembl: ENSRNOG00000018395
UniProt: D3ZL95
Position
9:complement(96055741..96126766)
AA seq 1235 aa
MFGNLFEEDYSSVSSSQYGSGKKLKTKGLEPPAPREFTKLSGIRNQGGTCYLSSLLQTLH
FTPEFREALFSLGPEELGSLEDKDKPEAKVRIIPLQLQRLFAQLLLVDQEAASTTDLTDS
FGWTSDEEMRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNVSE
RQEDFLDLTVAVKNVSGLEDALWNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPP
FLTISLLRFNFDFVKCERYKDTSCYTFPLRINLKPFCEQSDMDDMEYMYDLFSVIIHKGG
CYGGHYHVYIKDVDHLGNWQCQEEISDSAVNLKAPQNEEETDDPLVVLKAILLQEEANQI
PVDQLGQKLLIKTGISWNKKYRKQHGPLRKFLRLHPQVFLLSTDESTVSLQRSHFPQVPS
DPQSHEQIAHTLASEPPGLRDNISCPHWFDINDSKVQPIKEKDIMQQFQGKESAYMLFYR
KATLQRPSEAQANPRYRVPCHLLKEMDAANVLLQTRRAECDSANSTFELHLHLGPHYRFF
NGALHPAVSQTESVWDLTFDKRKTVGDLRQSIFQLLEFWEGDMVLSVAKRVPAGLHVYHT
LDGDELTLGEAEIADEEDIFVWNGVEVGGVQIQTGFDCEPLLLHILHLELSGEGSECEQL
VESPHVFPANAEVGTVFTALGTPEGVLLMNSVESTDEECWTAIPQEDMKKTFREQGLRNG
SLILVQDSDSDDNSLLSKQGRWTSSMNELNWLQVKNFCQSGSEEKQVQIAVTMHTVVFDI
RIKAIKELKLMKELAENSCLRPIDRNGRLLCPVPDTSTLEEAEVKMGSSVGLCLGKAPTS
SQLFLFFALGTDIHPGAELEVIVEETLSVRDCLKIMLEKSGQQGEMWHLRKMDWCYEAGE
PLCEEDATLKELMICSGDTLLLTEGKLPSPGHLKMPIWWYQPERLSGHRESWDHLNCAFS
QGSSWGAAPTQGAPGPEPAEVSLLYLGDMEISEEATLAELKSKALALPSVLKLAVQSTSL
LRVWTVESKRPSRLLRTGWRQLKEYRLGRRTELCLELLQKEEDLGPRDVLLRTQLRIPGE
RAYSLAKDLVWDTTRGWTAGSLRQRVADFYSLPVEKIEIAKYFPEKFEWLPISSWNQQIA
KRKKKKNQDTLQGGPYYLKDGDTIGIKNLLFDDNDDFSTIRDDIGKENQKRTALEKKKSR
EVQRTQSSDVFSNSGMPTRPRGPEASLSIHVASFR
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgtttgggaacctatttgaagaggactattccagtgtgtcaagtagtcagtatggaagc
gggaagaaattaaagactaaaggtttggagccacctgcccctagagaattcaccaagtta
agtggaatcagaaatcagggtggaacctgttacctcagttccctgcttcagacacttcac
ttcacacctgaattcagagaagctttattttctcttggtccggaagagctcggttctcta
gaggataaggataaacccgaagcaaaggtccggatcatacctttgcagttgcagcgcttg
tttgcccagcttctgctcgtggaccaggaggctgcatccaccacagacctcactgacagc
ttcgggtggaccagcgatgaggaaatgagacaacacgatgtgcaggaactcaaccgaatt
ctcttcagtgctttggaaacttctttagttgggacctctggccatgacctcattcatcgt
ctataccatggcaccattgtgaaccagattgtttgcaaagagtgtaagaatgtcagtgag
aggcaggaagacttcttggatttgacagtagcagtcaaaaacgtatctggtttagaagat
gcactctggaacatgtacgtggaggaggaaattttcgactatgataacttgtaccactgt
ggaacctgtgaccggctggtgaaagcagcaaagtctgccaaattacgtaagctgcctcct
tttcttactatttcattactaagatttaattttgattttgtgaaatgtgaacgctacaag
gatactagctgttatacattccccctccggatcaatctcaagcctttctgtgaacagagt
gacatggatgacatggaatatatgtatgacctcttctctgtcattatccacaaaggtggc
tgctatggaggtcattaccatgtgtacattaaagacgttgatcatctcggcaactggcaa
tgtcaagaggagataagtgattcagctgtgaatttgaaagctcctcagaatgaagaagag
actgatgatccactggtggttctaaaagcaatcttattgcaggaggaggccaatcaaatt
cctgttgatcagctgggccagaaactcttgataaaaacaggaatatcttggaacaagaag
tacaggaaacagcatggaccactgcgaaagttcttacggctccatcctcaggtatttctg
ctcagcacagatgaaagtacagtcagtctccagagaagccattttccccaggtcccgtct
gatccacagagccatgaacagattgcacacacacttgcttcagaacccccaggcttaagg
gataacatcagttgcccacactggtttgacatcaatgattccaaagtccagccaatcaaa
gagaaagatatcatgcagcagttccagggtaaagaaagtgcctacatgctattttatcgg
aaagccacgctgcagagaccctctgaagctcaagccaatccaagatacagagttccctgt
catttactaaaggaaatggatgcagccaacgttctcctgcagacgagaagggcagaatgt
gactctgcaaacagtacttttgagttgcatctccacttgggtcctcactaccgtttcttc
aatggggctcttcaccctgcagtctctcagactgagagcgtgtgggacttaacatttgat
aaaagaaaaactgtaggagatctccgtcagtcaatatttcagctattggagttctgggaa
ggagacatggttctcagtgttgcgaagcgtgtgccagcaggacttcatgtgtaccatacc
ctcgatggagatgaactgacactgggtgaagctgaaatcgctgatgaggaagacatcttt
gtatggaatggggtggaggttggtggagtccaaattcagactggttttgactgtgaacct
ctgctgttacacattcttcatctagagttaagtggggaaggctcagagtgtgagcagttg
gtggagtcgccacatgtctttcccgctaatgccgaagtgggcactgtgttcacagccttg
ggcaccccagaaggcgtcctcctcatgaacagtgtggaatctacagatgaagagtgctgg
actgctattccccaagaagacatgaagaagacattcagagagcaaggtctcagaaatgga
agcttaattttggttcaggattcagacagtgatgataacagtctgttgtccaaacaaggg
agatggaccagcagcatgaatgagctcaactggctccaagtgaaaaacttctgccagtca
ggatctgaagagaagcaggttcagatagccgtgaccatgcacacagtggtgtttgatatt
cgaattaaagccataaaggaattaaaattaatgaaggaactagctgagaacagctgtttg
agacccattgatagaaacgggaggctcctttgtccagtaccagataccagcactttggag
gaggcagaggtgaagatggggagctccgtgggactgtgtctggggaaagcaccaacttcc
tctcagctgttcctgttttttgctctggggactgacattcaccctggggcagagctggaa
gtcatagtagaagaaacactctcagtgagagattgtttaaagataatgctggagaagtca
ggtcagcaaggagagatgtggcacttaaggaaaatggattggtgctatgaagctggtgag
cctttatgtgaagaagatgcaacattgaaagagcttatgatatgttctggggacactttg
ctgttaactgaaggaaaactgccttctccggggcacttgaagatgcccatctggtggtac
cagcctgaaaggctgtcaggacaccgtgagagctgggaccacttaaactgtgccttttct
caaggtagcagctggggagctgctcccacccaaggtgctcctggccctgagcctgcagaa
gtctctctcctctacttgggagatatggagatctcagaagaggccactttggcagaactg
aagtctaaggccttggccttgccttctgtgttgaagctcgccgtccagtccacaagcctg
cttagagtctggacagtggagagcaagcgccccagcaggctcttgcgcactggttggcgg
cagctcaaggagtacagactgggccggagaactgagctctgcttagagctccttcaaaag
gaggaggacttgggcccccgggatgtactgctgaggacacagctacgcatccctggtgag
agagcctactccctggccaaagacctagtatgggacaccaccagaggatggactgctggc
tccttgaggcagagagtggctgacttctattctcttcctgtggagaaaattgaaattgcc
aaatattttcctgaaaagtttgagtggcttccaatatctagctggaatcagcaaattgcc
aaaaggaaaaagaagaaaaaccaagatactttgcaagggggaccatattacttaaaagac
ggagacactattggcattaagaatctcttgtttgatgacaatgatgatttcagcacaatc
agagatgacattggaaaggaaaaccagaagcggacagctctggagaaaaagaaaagccga
gaagtccaacgtacacagagcagcgatgtgttctccaattcaggaatgcctactaggccc
cggggaccagaagcttctctgtccatccatgttgcgagcttcagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (17)   
   UniProt (1)   
   RefSeq(pep) (16)   
DNA sequence (25)   
   RefSeq(nuc) (19)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (57)   

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