KEGG   Rattus norvegicus (rat): 316794
Entry
316794            CDS       T01003                                 
Symbol
Brcc3
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03440  Homologous recombination
rno04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    316794 (Brcc3)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    316794 (Brcc3)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    316794 (Brcc3)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    316794 (Brcc3)
   03036 Chromosome and associated proteins [BR:rno03036]
    316794 (Brcc3)
   03400 DNA repair and recombination proteins [BR:rno03400]
    316794 (Brcc3)
Peptidases and inhibitors [BR:rno01002]
 Metallo peptidases
  Family M67
   316794 (Brcc3)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    316794 (Brcc3)
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    316794 (Brcc3)
   BRISC complex
    316794 (Brcc3)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     316794 (Brcc3)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     316794 (Brcc3)
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172
Other DBs
NCBI-GeneID: 316794
NCBI-ProteinID: NP_001120772
RGD: 1588543
Ensembl: ENSRNOG00000048061
UniProt: B2RYM5
Position
9:2073927..2076469
AA seq 291 aa
MAVPVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDVRSESKFAHAGSDVC
TVPEKVDSIRVVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQK
SSDYERIEIPVHVVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNG
SVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQREKEELMAELRSLE
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcggtgccggtggttcaggccgtgcaggctgtccatctggagtcggacgcctttctg
gtttgtctgaaccacgccctgagtacggagaaagaggaggtgatgggtctgtgcatcggg
gagctgaacgacgacgtaaggagtgagtccaaattcgcacacgccggaagtgacgtgtgc
acggttccggagaaggtggattcgatcagagtcgtccacatccactcggtcatcatcctg
cgccgttctgacaagaggaaggaccgcgtggagatttccccagagcagctgtctgcagcc
tcgactgaggcggaaaggttggcggaactcactggccgtcccatgagagtcgtcggctgg
taccattcgcaccctcacataacggtgtggccttcacacgtggatgttcgcacgcaagcc
atgtaccaaatgatggaccaaggcttcgtgggacttattttctcctgtttcatagaagac
aagaacacaaagaccggacgtgtcctctacacttgcttccaatccgtacaagcccagaaa
agctcagactatgagagaatcgaaatccccgtccacgtcgttccccacgtcaccatcggg
aaagtttgcctggagtccgcggtggagctgccgaagatcctgtgtcaggaggagcaggac
gcgtacaggcggatccatagcctcacacatctggactcggtgaccaagatccacaatggc
tcggtcttcaccaagaatctgtgcagccagatgtcggcggtgagtgggcctctgctgcag
tggttagaggacagattggagcaaaaccagcagcatctgcgggagctgcagcgggagaag
gaggagctcatggcggagctgcgttcgctcgaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

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