KEGG   Rattus norvegicus (rat): 317399
Entry
317399            CDS       T01003                                 
Symbol
Ddx21
Name
(RefSeq) nucleolar RNA helicase 2
  KO
K16911  ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rno03009]
    317399 (Ddx21)
   03036 Chromosome and associated proteins [BR:rno03036]
    317399 (Ddx21)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    317399 (Ddx21)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    317399 (Ddx21)
SSDB
Motif
Pfam: DEAD Helicase_C GUCT ResIII CMS1 AAA_30 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 317399
NCBI-ProteinID: NP_001032278
RGD: 1307306
Ensembl: ENSRNOG00000043099
UniProt: Q3B8Q1 A6K457
Position
20:complement(31077044..31097238)
AA seq 782 aa
MPGKLRSASKSESEGTEESMETLQKPSEKKTRKEKPKSKTDEATEGVEEAASSKVKAVKK
KGPSEDDVGPPKSKKAKKQEEEPQDDPASKSKTSKKKKEPLEKKAPSAKTKEMKAEEPSE
EEADAPKPKKTKKGKEANGDVGEKSPGLKNGLSHPKPDSSSTQAPGEESETEKEIPVEQK
EGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL
IEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIER
MRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKD
SEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERA
AVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFR
NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK
EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEE
KGAVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSVEMPNISYAWKELKEQLGES
IDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHDSRRWQLTVATEQPELEGPPEGYRGG
RGQRDGSRGSFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNKSNRSPNKGQKRSFSKAF
GQ
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgccgggaaaactccgcagtgcgtccaagtcggagtcagaagggaccgaggagagtatg
gagacgctgcagaagccaagcgagaagaaaactagaaaagagaagccaaaatctaagact
gacgaggcaacagaaggagtggaagaggccgcttcctccaaagtgaaagcagttaaaaag
aaagggccttctgaggatgatgtgggtccccctaaatccaagaaggccaagaagcaggag
gaggagcctcaagatgaccctgcttctaaaagcaaaacctccaagaagaaaaaggagccc
ctagagaagaaagcaccctctgctaaaaccaaagaaatgaaagccgaggagccttctgag
gaagaggcagacgctcctaagcccaaaaagacaaagaaagggaaggaagcaaacggagat
gtgggagagaagagccccgggctgaagaatgggctctcccatcccaagccagactccagc
tccacccaagctcccggagaggaaagcgagacagaaaaggaaatacccgtggagcagaaa
gaaggagccttctctaattttcccatatcagaagagactgtcaaacttctcaaagctcgt
ggggtgaacttcctcttccctatacaagccaagacattccaccatgtgtacagtgggaag
gacttaatcgcccaggcacgcacaggaaccgggaagaccttctcctttgccatccctttg
attgagaaacttcaaggtgggctgcaagagaggaagagaggccgagcccctcaggtgcta
gtccttgcacctacaagagaattagcaaatcaagtgagcaaagacttcagtgacatcacc
aaaaagctctcagtagcctgtttttatggtggaactccctatggtggtcaaatcgaacga
atgcggagtgggattgacatcctggtcgggaccccaggtcgtattaaagaccacttgcag
aatggcaagctagacctcaccaaacttaaacatgttgtcctggatgaagttgatcagatg
ttggatatgggctttgctgatcaagtggaagaaattttatgtgtggcatacaagaaagat
tctgaagacaacccccaaacattgcttttctctgcaacttgccctcattgggtatttaat
gttgctaagaaatacatgaaatctacatacgaacaggtggacctgattggtaaaaagact
cagaaagcagccataactgtggagcacctggcgattaagtgtcactggacagagagggca
gcggtgattggggatgtgatccgagtgtacagtggtcaccaagggcgtacaatcatcttc
tgcgaaaccaagaaggatgcacaggagctgtcgcagaacacgtgcataaagcaggatgcc
cagtccttacatggcgacattccacagaagcaaagggaaatcaccctgaaaggtttccga
aatggcaattttggagttttggtggcaaccaatgttgctgcccgtgggttagacatccct
gaggttgacctggttgttcagagctgtccaccaaaggatgtggagtcttacattcatcgt
tcggggcggacaggcagagctggaagaacaggggtttgcatctgcttttatcagcacaaa
gaagagtaccagttagcacaagtggaacagaaagcgggaattaaatttaaacggataggt
gttccttctgcaacagaaataataaaagcctccagcaaagacgcaatcaggctcttggat
tctgtgcctcccactgctattggccatttcaagcagtcggctgagaagctgatcgaggag
aagggagctgtagaggccctggccgcagctctggcccacatctcgggggccacatcggtg
gaccagcgctccctaatcaactcacaagcgggctttgtgaccatgatcctgcggtgttct
gttgagatgcccaacattagttatgcctggaaagaacttaaggagcagctgggtgagagc
atcgatgccaaagtgaaggggatggtcttcctcaaaggaaaactgggagtttgttttgat
gtccgcactgaagcagtcacagaaataaaggagaagtggcacgattcgagacgctggcag
ctcactgtggccaccgagcagccggagctggaaggacccccagaaggataccgaggcggc
aggggccagcgggatggcagccgtggctctttcagaggacagcggggtggaagcaggaac
ttccggggacagggacagcgaggaggaagtagaaacttcagaggacagcgaccaggaggt
ggcaacaaaagtaacaggtccccaaacaaaggccagaagcggagttttagtaaagcattt
ggtcagtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (29)   

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