KEGG   Rattus norvegicus (rat): 360272
Entry
360272            CDS       T01003                                 
Symbol
Slit2
Name
(RefSeq) slit homolog 2 protein precursor
  KO
K06839  slit 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    360272 (Slit2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    360272 (Slit2)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Axon guidance molecules
   360272 (Slit2)
SSDB
Motif
Pfam: LRR_8 LRR_4 LRR_5 EGF Laminin_G_1 Laminin_G_2 LRRNT LRR_1 LRR_9 LRRCT hEGF DL-JAG_EGF-like JAG1-like_EGF2 EGF_3
Other DBs
NCBI-GeneID: 360272
NCBI-ProteinID: NP_072154
RGD: 69310
Ensembl: ENSRNOG00000003840
UniProt: F1MA79
Position
14:complement(66829661..67168517)
AA seq 1525 aa
MSGIGWQTLSLSLALVLSILNQVAPQACPAQCSCSGSTVDCHGLALRSVPRNIPRNTERL
DLNGNNITRITKTDFAGLRHLRVLQLMENKISTIERGAFQDLKELERLRLNRNNLQLFPE
LLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVL
TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS
HLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPIACTCSNNIVDCRGKGLTEIPT
NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY
GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTF
SALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF
RCSGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNKIPDHIPQYTAELRLNNNE
FTVLEATGIFKKLPQLRKINLSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG
LESLKTLMLRSNRISCVGNDSFTGLGSVRLLSLYDNQITTVAPGAFGTLHSLSTLNLLAN
PFNCNCHLAWLGEWLRRKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGNDDNSCSPL
SRCPSECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL
SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA
FGDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK
FTCQGPVDVTIQAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDVPIHACISN
PCKHGGTCHLKEGENDGFWCTCADGFEGESCDINIDDCEDNDCENNSTCVDGINNYTCLC
PPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYIGEHCDIDFDDCQDNK
CKNGAHCTDAVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDNFDCQNGAQCIIRVNEPI
CQCLPGYLGEKCEKLVSVNFVNKESYLQIPSAKVRPQTNITLQIATDEDSGILLYKGDKD
HIAVELYRGRVRASYDTGSHPASAIYSVETINDGNFHIVELLTLDSSLSLSVDGGSPKII
TNLSKQSTLNFDSPLYVGGMPGKNNVASLRQAPGQNGTSFHGCIRNLYINSELQDFRKVP
MQTGILPGCEPCHKKVCAHGTCQPSSQSGFTCECEEGWMGPLCDQRTNDPCLGNKCVHGT
CLPINAFSYSCKCLEGHGGVLCDEEEDLFNPCQVIKCKHGKCRLSGLGQPYCECSSGFTG
DSCDREISCRGERIRDYYQKQQGYAACQTTKKVSRLECRGGCAGGQCCGPLRSKRRKYSF
ECTDGSSFVDEVEKVVKCGCTRCAS
NT seq 4578 nt   +upstreamnt  +downstreamnt
atgagtggcattggctggcagacactgtccctatctctggcgttagtgttgtcgatcttg
aaccaggtggcgcctcaggcgtgcccggcccagtgctcctgttcaggcagcacagtggac
tgtcatgggctggcactgcgcagtgtgcccaggaatatcccccgcaacacggagagactg
gatttgaatggaaataacatcacaaggatcacgaagacagattttgcgggtctcagacac
ctcagagttcttcagctcatggagaacaagatcagcaccatcgagaggggagcattccag
gatcttaaggagctagaaagactgcgtttaaacagaaataaccttcagttgtttcctgag
ctgctgtttcttgggactgcgaagctctaccggcttgatctcagtgaaaatcagattcaa
gcaattccaaggaaggctttccgtggtgcagttgacattaaaaatctgcagttggattac
aaccagatcagctgcattgaagatggggcattccgagctctgcgagatctggaagtgctc
actctgaacaataacaatattactagactttcagtggcaagtttcaaccatatgcctaaa
cttaggacatttcgactccactccaacaacctatactgcgactgccacctggcctggctc
tcggactggcttcgccaaaggccacgggtgggcttgtacactcagtgtatgggcccatcc
cacctgaggggccataatgtagcagaggttcaaaaacgagagtttgtctgcagtgatgag
gaagaaggtcaccagtcattcatggctccctcctgcagtgtgctgcactgcccgattgct
tgtacctgtagcaacaacattgtagactgccgagggaaaggtctcactgagatccccaca
aatctgcctgagaccatcacagaaatacgtttggaacagaactccataagggtcatccct
ccaggagcattctcaccatacaaaaagcttcgacgactagacctgagtaataaccagatc
tcggaacttgctccagatgccttccaaggactgcgttctctgaattcccttgtcctgtat
ggaaataaaatcacagaactcccaaaaagtttatttgaaggactgttttccttacagcta
ctattattgaatgccaacaagataaactgccttcgggtagatgcttttcaggacctgcac
aacttgaaccttctctccttatacgacaataagcttcagactgttgccaagggcaccttc
tcagctctcagagccatccaaactatgcatttggcccagaatcctttcatttgtgactgc
catctcaagtggctagcggattatctccacaccaacccaattgagaccagcggtgcccgt
tgcaccagtccccgccgcctggctaacaaaagaattggacagatcaaaagcaagaaattc
cgttgttcaggtacagaagattatcgatcaaaattaagtggagactgctttgcagacttg
gcttgtcctgaaaaatgtcgctgtgaagggaccacagtagactgctccaatcaaaaactc
aacaaaatcccagaccatattccccagtacacagcagagctgcgtctcaataataatgaa
ttcacagtgttagaagccacgggaatatttaagaaacttcctcaattgcgtaaaatcaac
cttagcaacaataagatcactgatatcgaggagggggcattcgaaggtgcgtctggtgtg
aatgagattctgcttaccagtaaccgtttggaaaatgttcagcataagatgttcaaagga
ttggagagcctcaaaacattgatgctgagaagtaatcgaataagctgtgtgggaaacgac
agtttcacaggactcggttctgtgcgtctgctctctttatatgacaatcaaattaccaca
gttgcaccaggagcatttggtactctccattcattatctacactaaacctcttggccaat
cctttcaactgtaactgtcacctggcatggcttggagaatggctcagaaggaaaagaatt
gtaacaggaaatcctcgatgccaaaaaccctacttcttgaaggaaataccaatccaggat
gtagccattcaggacttcacctgtgatgacggaaacgatgataatagctgctctccactc
tcccgttgtccttcggaatgtacttgcttggatacagtagtacgatgtagcaacaagggc
ttgaaggtcttacctaaaggcattccaagagatgtcacagaactgtatctggatgggaac
cagtttacactggtcccgaaggaactctccaactacaaacatttaacacttatagactta
agtaacaacagaataagcaccctttccaaccaaagcttcagcaacatgacccaacttctc
accttaattctcagttacaaccgtctgagatgtatccctccacggacctttgatggattg
aaatctcttcgtttactgtctctacatggaaatgacatttctgtcgtgcctgaaggtgcc
tttggtgacctttcagccttgtcacacttagcaattggagccaaccctctttactgtgat
tgtaacatgcagtggttatccgactgggtgaagtcggaatataaggaacctggaattgcc
cgctgtgccggtcccggagaaatggcagataaattgttactcacaactccctccaaaaaa
tttacatgtcaaggtcctgtggatgttactattcaagccaagtgtaacccctgcttgtca
aatccatgtaaaaatgatggcacctgtaacaatgacccggtggatttttatcgatgcacc
tgcccatatggtttcaagggccaggactgtgatgtccccattcatgcctgtatcagtaat
ccatgtaaacatggaggaacttgccacttaaaagaaggagagaatgatggattctggtgt
acttgtgctgatgggtttgaaggagaaagctgtgacatcaatattgatgattgcgaagat
aatgattgtgaaaataattctacatgcgttgatggaattaacaactacacgtgtctttgc
ccaccggaatacacaggcgaactgtgtgaggaaaaactggacttctgtgcacaagacctg
aatccctgccagcatgactccaagtgcatcctgacgccaaagggattcaagtgtgactgc
actccgggatacattggtgagcactgtgacatcgactttgatgactgccaagataacaag
tgcaaaaacggtgctcattgcacagatgcagtgaacggatacacatgtgtctgtcctgaa
ggctacagtggcttgttctgtgagttttctccacccatggtcctccctcgcaccagcccc
tgtgataattttgattgtcagaatggagcccagtgtatcatcagggtgaatgaaccaata
tgccagtgtttgcctggctacttgggagagaagtgtgagaaattggtcagtgtgaatttt
gtaaacaaagagtcctatcttcagattccttcagccaaggttcgacctcagacaaacatc
acacttcagattgccacagatgaagacagcggcatcctcttgtacaagggtgacaaggac
cacattgctgtggaactctatcgagggcgagttcgagccagctatgacaccggctctcac
ccggcttctgccatttacagtgtggagacaatcaatgatggaaacttccacattgtagag
ctactgaccctggattcgagtctttccctctctgtggatggaggaagccctaaaatcatc
accaatttgtcaaaacaatctactctgaatttcgactctccactttacgtaggaggtatg
cctgggaaaaataacgtggcttcgctgcgccaggcccctgggcagaacggcaccagcttc
catggctgtatccggaacctttacattaacagtgaactgcaggacttccggaaagtgcct
atgcaaaccggaattctgcctggctgtgaaccatgccacaagaaagtgtgtgcccatggc
acatgccagcccagcagccaatcaggcttcacctgtgaatgtgaggaagggtggatgggg
cccctctgtgaccagagaaccaatgatccctgtctcggaaacaaatgtgtacatgggacc
tgcttgcccatcaacgccttctcctacagctgcaagtgcctggagggccacggcggggtc
ctctgtgatgaagaagaagatctgtttaacccctgccaggtgatcaagtgcaagcacggg
aagtgcaggctctctgggctcgggcagccctattgtgaatgcagcagtggattcaccggg
gacagctgtgacagagaaatttcttgtcgaggggaacggataagggattattaccaaaag
cagcagggttacgctgcctgtcaaacgactaagaaagtatctcgcttggagtgcagaggc
gggtgtgctggggggcagtgctgtggacctctgagaagcaagaggcggaaatactctttc
gaatgcacagatggatcttcatttgtggacgaggtcgagaaggtggtgaagtgcggctgc
acgagatgtgcctcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (14)   
   Pfam (14)   
All databases (35)   

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