KEGG   Rattus norvegicus (rat): 360557
Entry
360557            CDS       T01003                                 
Symbol
Nlrp1a
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1a allele 1
  KO
K12798  NACHT, LRR and PYD domains-containing protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    360557 (Nlrp1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    360557 (Nlrp1a)
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:rno04054]
    360557 (Nlrp1a)
Membrane trafficking [BR:rno04131]
 Autophagy
  Other autophagy associated proteins
   TRIM-directed selective autophagy
    360557 (Nlrp1a)
Pattern recognition receptors [BR:rno04054]
 Cytoplasmic pattern recognition receptors
  NOD-like receptors
   360557 (Nlrp1a)
SSDB
Motif
Pfam: FIIND NACHT NLRC4_HD2 CARD NOD2_WH LRR_6 AAA_16 NB-ARC AAA_22 nSTAND3 AAA_30 Zeta_toxin AAA_14 LRR_1
Other DBs
NCBI-GeneID: 360557
NCBI-ProteinID: NP_001139227
RGD: 1310963
Ensembl: ENSRNOG00000023143
UniProt: D9I2F9
Structure
Position
10:complement(56277134..56332229)
AA seq 1218 aa
MEESQSKQESNTRVAQHGSQQDVDPTFQTKRALEKERSKPRPRPLPRVQLQSLPGWSSTS
NDVPLSQLIREMDHESRRCIHRSKKKLDRSEHISQGTIPEIYEKRKETISHTQSMEQKYL
FQNFTKLLLLQKCCPGGSEKLVRESWHPCVPEEGGHMIEIQDLFDPNLDTEKKPQLVIIE
GAAGIGKSTLARQVKRAWDEGQLYRDRFQHVFFFSCRELAQCKQLSLAELIAQGQEVPTA
PTRQILSRPEKLLFILDGIDEPAWVLEDQNPELCVHWSQAQPVHTLLGSLLGKSILPEAS
LMLTARTTALQKLVPSLGQPHRVEVLGFSEFERKDYFYKYFAKERNTIIDFNLIGSIPVL
LTLCEVPWVCWLLCTCLEKQMQQGEVLSLTSQTTTALCLKYLSLTIPGQHLSTQLRTLCS
LAAEGICQRRTLFSKSDLCKQGLAEDAIATFLKIGVLQRQPSSLSYSFAHLCLQEFFAAM
SYILEDSEEAHGDMGNDRTVETLVERYGRQNLFEAPTVRFLLGLLNTREMREMENIFACK
FPWETKLKLLQSIIGEPFCQPCHLGLFHCLYENQEEELLTETMLCFPLTASGPNHMEATV
FQTNVKRLVIQTDMELMVVTFCITFSHVRSLRLKGKGQQEYKLTAPAMVLYRWTPISEAS
WKVLFSNLKCTRNLEELDLSGNPLSYSAVRSLCTALRQPGCRLKTLWLVDCGLTSRCCSF
LASMLSAHSRLAELDLRLNDLGDNGVRQLCEGLRNPACNLSILRLDQASLSEQVITELRA
LETKNPKLFISSTWMSHMTMPTENTDGEESLTSSKQQQQQSGDKHMEPLGTDDDFWGPSG
PVSTEVVDRERNLYRVRLPMAGSYHCPSTGLHFVVTRAVTIEIGFCAWSQFLHETPLQHS
HMVAGPLFDIKAEHGAVTAVCLPHFVSLQEGKVDSSLFHVAHFQDHGMVLETPARVEPHF
AVLENPSFSPMGVLLRMIPAVGHFIPITSITLIYYRLYLEDITFHLYLVPNDCTIRKAID
EEELKFQFVRINKPPPVDALYVGSRYIVSSSKEVEILPKELELCYRSPRESQLFSEIYVG
NIGSGINLQLTDKKYMNLIWEALLKPGDLRPALPRMASAPKDAPALLHFVDQHREQLVAR
VTSVDPLLDKLHGLVLSEEDYETVRAEATNQDKMRKLFRGSRSWSWDCKDHFYQALKETH
PHLIMDLLEKSGGVSVRL
NT seq 3657 nt   +upstreamnt  +downstreamnt
atggaagaatctcagtccaagcaggaaagtaacacaagggtggctcagcatggaagccaa
caggatgtggaccccaccttccaaacaaagagagcattggagaaggagcggtcaaaaccc
agaccccggccgcttcctcgggtgcagctccaatcacttcctggatggtccagcacatcc
aatgatgtgccccttagccagctcatccgtgaaatggatcatgagtcaaggagatgcatt
catcgatcaaagaagaaacttgacaggtctgaacatataagccaagggaccattccagaa
atatatgagaagcgaaaagagactatttcccacacacagtccatggaacaaaagtatttg
ttccaaaatttcacaaagctactactcctacaaaaatgttgcccaggaggctcagagaaa
ttggtcagggaaagctggcatccatgtgtaccagaagaaggaggacatatgattgagatc
caagacttatttgacccaaacttagatactgagaaaaagcctcaattagtcataatagag
ggggctgctgggattgggaagtcaacactggccaggcaggtgaagagagcctgggacgaa
ggccagctctacagggatcgcttccagcatgtcttcttcttcagctgcagagagctggcc
cagtgcaagcagctgagtctggctgagctcatagcccaaggccaggaagtgcccacagct
cccaccagacagatcctgtctcgccctgagaagctgctcttcatcctggatggcatagat
gagccagcatgggtcttggaggaccagaatcctgagctgtgtgtgcactggagtcaagca
caacctgtgcacacactgctgggcagtttactaggaaaatccatccttcctgaggcttcc
ttaatgctcacagctcggaccacagctctacagaagcttgttccttccttggggcagcca
catcgagtggaagtcctggggttctctgagtttgaacggaaggactatttctacaaatac
tttgcaaaagaaagaaatacaattatagattttaatttaattggatctatcccagtgctc
ctgaccctatgtgaggtcccctgggtgtgctggttgctgtgcacttgcctggaaaagcag
atgcagcagggtgaagtactctcactgacctcacagaccaccacagccctctgcctgaaa
tacctttccctgacaatcccaggtcagcacctgagcacccagctcaggaccctctgctca
ctggctgctgaggggatctgccaaagaaggaccctgttcagtaaaagtgacctctgtaag
caagggttagcagaggatgccattgccactttcctgaagatcggtgtccttcaaaggcag
cccagctctctgagctacagctttgcccacttgtgtctccaggagttctttgcagcgatg
tcctacatcttggaggatagtgaggaagcacatggggatatgggaaacgacagaactgtg
gaaacactggtagaacggtatggaagacaaaacctgtttgaggcacccactgtgcgcttt
ctacttggtcttttaaatacacgggaaatgagagaaatggaaaatatctttgcctgcaag
tttccttgggagacaaagttgaagttgctacagagcatcataggggagccgttctgtcaa
ccatgtcatctgggtttgttccactgtctctatgaaaaccaggaagaggagctcctgaca
gagacgatgctttgttttcccttaacagcgtcaggtccaaatcacatggaagccacggtg
ttccagacaaacgtgaagcgcctggtgatacagacagacatggagctcatggtggtcact
ttctgcattacgttctctcatgtgaggagtcttcggctgaaggggaaaggacagcaggaa
tataagctaacagcacctgcgatggttctgtacaggtggacaccaatctctgaggccagt
tggaaggttttattctccaatcttaaatgcaccagaaacctggaggagctggacctaagt
ggaaatccactgagctactctgcagtacgcagtctctgtacagcactgagacagcctggc
tgccgactaaagaccttgtggcttgtggactgtggcctcacatccagatgctgctcattc
ctggcctcaatgctcagtgcccactcaaggttggctgaactagacctgcgactgaatgac
cttggtgacaacggtgtgaggcagctgtgtgaggggctcaggaatcctgcctgcaacctc
agcatcctgcggctggaccaggcctctctcagtgagcaggtgattacagagctcagggcc
ctggagacaaagaatccgaagctgttcatctccagcacatggatgtcacacatgacgatg
cccactgaaaacacagatggagaagagagcctgacctcatccaagcagcaacaacaacaa
tcgggagacaaacacatggaacctctggggactgatgatgacttctggggcccttcagga
cctgtgtctactgaggtggttgacagagagaggaacctgtaccgagtgcgattgcccatg
gctggttcctaccactgtcccagcacaggactccactttgtggtgacaagggcagtgaca
atcgagattggattctgtgcctggagccaattcctgcatgagactcccttgcaacacagt
cacatggtggctggacctctgtttgacatcaaggctgagcacggagctgtgactgcagtg
tgcctccctcattttgtgtccctccaagagggaaaggtggacagctccttgttccatgtt
gcccacttccaagaccatgggatggtcctagaaacgccagcaagggtggaaccacatttc
gcagtactggaaaacccaagcttctcccctatgggagttttactgagaatgattcctgct
gtgggacacttcatccccatcacttccatcacattgatctactatcgcctgtatctcgag
gacatcacctttcacctttacctggtccccaatgactgcactattcggaaggccattgat
gaggaagaactgaagtttcagtttgtgcgcataaacaagccacccccagtagatgctctt
tatgttggttcccgctatatcgtgtccagctccaaagaggtggaaattctcccaaaggaa
ctggagctgtgctaccgaagccctcgggaatcccagctcttctctgagatatatgttgga
aacattggttcagggattaatctgcaactaacagacaagaagtatatgaatctcatatgg
gaggccttgctgaaaccaggggacctcagacctgcactgcccaggatggcttcagccccc
aaagatgctcctgccctgctacacttcgtggaccagcatcgggagcagctggtggcccga
gtgacatcagtggaccctctcttggacaagctgcatggtctggtgctgagtgaagaagat
tatgagacagtgagggctgaggccacaaaccaagacaagatgaggaagctcttcaggggc
agccggtcctggagctgggattgcaaagaccatttctaccaagctctgaaggagacccat
cctcacctgatcatggacctccttgagaagtcgggaggggtctctgttagactctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (32)   
   RefSeq(nuc) (6)   
   GenBank (13)   
   EMBL (13)   
3D Structure (2)   
   PDB (2)   
Protein domain (14)   
   Pfam (14)   
All databases (66)   

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