KEGG   Rattus norvegicus (rat): 360797
Entry
360797            CDS       T01003                                 
Symbol
Rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
  KO
K20131  Rab5 GDP/GTP exchange factor
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    360797 (Rabgef1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    360797 (Rabgef1)
Membrane trafficking [BR:rno04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    360797 (Rabgef1)
 Protein recycling
   Other Rab GTPase associated proteins
    360797 (Rabgef1)
SSDB
Motif
Pfam: VPS9 DUF5601 zf-A20 CID_GANP
Other DBs
NCBI-GeneID: 360797
NCBI-ProteinID: NP_001101803
RGD: 1307295
Ensembl: ENSRNOG00000000895
UniProt: G3V631 A6J0M5
Position
12:complement(32096338..32139949)
AA seq 502 aa
MLSHSLVIRKKMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQR
QIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASS
RAGSKKEIQEAKAPSPSINRQTSIETDRVTKEFIDFLKTFHKTGQEVYKQTKMFLEAMPY
KRDLSIEEQSECTQDFYQNVAERLQTRGKVPPEKVEKMMDQIEKHIMTRLYKFVFCPETT
DDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLA
CITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMT
GEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESESWSPEACLGVKQ
MYKNLDLLSQLNERQERIMTEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQPLAA
IDSENVENDKLPPPLQPQVYAG
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgctttctcactccttggttatcaggaagaagatgagcctgaagtccgaacgccgggga
attcatgtggatcagtcggagctcctgtgcaagaaaggatgtggttattatggaaaccct
gcctggcagggtttctgctccaaatgctggagggaggagtaccacaaggcccggcagagg
cagatccaagaggactgggaactagcagaacgacttcagcgggaggaggaagaggccttc
gctagcagccagagcagccaaggagcccagtccctcaccttctccaagtttgaggagaag
aaaaccaatgagaaaactcgcaaagtcaccacagtgaagaagttcttcagcgcctcttcc
agggctggatccaagaaggaaattcaggaagccaaagctcccagtccctccataaaccgg
cagaccagcattgagacggaccgagtgactaaggagttcatagactttctcaagaccttc
cacaagacaggccaagaagtctataaacagacgaagatgtttttggaagcaatgccttat
aaaagggatttaagcatcgaggaacagtcagaatgtactcaggacttttaccagaatgtg
gcggaaaggttgcagacccgcgggaaagtgcctccagagaaagtggagaagatgatggat
cagatcgaaaagcacatcatgacccgtctctataaatttgtgttctgcccagagacgact
gatgacgagaaaaaagatctcgccattcaaaagaggatcagggctctgcactgggtgaca
cctcagatgctctgtgtcccggtcaatgaggaaatcccggaagtgtctgacatggtggtg
aaagcgatcacagacatcattgagatggactcaaagcgtgtgcctcgggacaagctggcc
tgcatcaccaggtgtagcaagcacatcttcaatgccatcaagatcaccaagaatgagcca
gcctctgccgatgacttcctgcccacccttatctacatcgtcctgaagggcaacccccct
cgtctgcagtccaacatccagtacatcactcgcttctgcaaccccagccggctcatgacg
ggcgaggatggctactacttcaccaacctgtgctgtgctgtggctttcattgagaaacta
gacgctcagtctttgaatttaagtcaggaggattttgaccggtacatgtctggccagacg
tcccccaggaagcaagagtctgagagttggtccccggaggcctgcttaggtgtgaagcaa
atgtataagaacttggacctcctgtctcagctgaatgaacggcaggaaagaatcatgact
gaagccaagaaactcgaaaaagacttaatagactggacagatgggatcgccaaggaagtt
caagacattgttgagaagtaccctcttgagattaagcccccaaaccaacccttagcagcc
attgactctgagaatgtggagaacgacaagctccctccccctctgcagccgcaggtgtat
gcagggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (2)   
   RefSeq(pep) (8)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (34)   

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