KEGG   Rattus norvegicus (rat): 360834
Entry
360834            CDS       T01003                                 
Symbol
Vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
rno04144  Endocytosis
rno04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    360834 (Vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    360834 (Vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    360834 (Vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    360834 (Vps4b)
   03400 DNA repair and recombination proteins [BR:rno03400]
    360834 (Vps4b)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    360834 (Vps4b)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    360834 (Vps4b)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 AAA_5 RuvB_N AAA_22 IstB_IS21 AAA_25 AAA_2 AAA_18 DUF815 AAA_33 nSTAND3 AAA_17 RNA_helicase AAA_24 PhoH AAA_7 Mg_chelatase ResIII AAA_28 Parvo_NS1 NACHT bpMoxR KAP_NTPase TPR_1 DUF5906 TPR_10
Other DBs
NCBI-GeneID: 360834
NCBI-ProteinID: NP_001020887
RGD: 1305969
Ensembl: ENSRNOG00000002705
UniProt: Q4KLL7
Position
13:complement(23421758..23446848)
AA seq 444 aa
MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKKPQKPMKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSS
TKPTVNEQDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcgtccacgaacaccaacctccagaaagcaatagatcttgcaagcaaagcagcccag
gaagacaaagctgggaactatgaggaagctctccaactctaccagcatgctgttcagtat
tttctccatgttgttaaatatgaagcacaaggtgataaagccaagcaaagcatcagggcc
aagtgtacagaatatcttgatagagcagaaaaactaaaggaatatctgaagaaaaaagag
aagaagccacagaagcccatgaaagaggaacagtcaggtccagtcgatgagaaggggaat
gacagtgatggggaagcagaatctgatgatcctgaaaaaaagaaactgcagaatcaactt
caaggtgccattgttatagagcgaccgaatgtgaagtggagtgatgttgctggtctggaa
ggagccaaagaagctcttaaagaggctgtcattctgcctattaagtttcctcatctgttt
acagggaagaggacaccttggagaggaatcctattatttgggccaccaggaacaggaaaa
tcctatttagccaaagctgttgcgacagaagcaaacaactcaacgtttttctcaatatct
tcctccgacctggtgtctaagtggctgggggagagtgaaaaactggttaagaacttattc
cagctcgccagagagaacaagccttccatcatcttcatcgatgagattgactctctgtgc
ggttccagaagtgagaatgagagcgaggctgcacggagaattaagactgagttcctggtt
cagatgcaaggagttggtgtggacaatgatggcattttggttctgggagctacaaatatc
ccctgggtgctggactctgcaattaggcgaagatttgagaaacgtatttatattcctttg
cctgaagcccacgctcgggcagccatgtttagactgcacttgggcagcactcagaacagc
ctcacagaagcagacttccaagagcttgggaggaagacagatggctattcaggagcagat
ataagcatcatcgtacgggatgcacttatgcagcctgtgagaaaagttcagtcggctact
cacttcaaaaaggttcgtgggccctcaagggctgatcctaactgcattgtaaatgacctg
ctgacaccctgctctccgggagatccaggggctattgaaatgacgtggatggatgtccct
ggagataaactcttggagccagttgtttccatgtgggatatgctgcggtccctatccagc
acaaagcccacagtcaatgagcaggacttgttgaaactgaagaagtttacagaagatttt
ggccaggaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (32)   
   Pfam (32)   
All databases (52)   

Download RDF
DBGET integrated database retrieval system