KEGG   Rattus norvegicus (rat): 360972
Entry
360972            CDS       T01003                                 
Symbol
Thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform 1
  KO
K13174  THO complex subunit 5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    360972 (Thoc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    360972 (Thoc5)
   03041 Spliceosome [BR:rno03041]
    360972 (Thoc5)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     360972 (Thoc5)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    360972 (Thoc5)
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 360972
NCBI-ProteinID: NP_001012153
RGD: 1304991
Ensembl: ENSRNOG00000008456
UniProt: Q68FX7
Position
14:83982302..84016193
AA seq 682 aa
MSSESSKKRKPKVIRSDGTPTEGKRNRSDTEQEGRYYSEEAEVDLRDPGRDYELYKYTCQ
ELQRLMAEIQDLKSKGSKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYSEAPPNISKAEITM
GDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKAL
FKPPEDSQDDESDSDAEEEQTTRRRPTLGVQLDDKRKEMLKRHPLSVLLDLKCKDNSVLH
LTFFYLMNLNIMTVKAKVTTAMELITPISAGDLLSPDSVLSCLYPGDHGKKTPNPANQYQ
FDKVGILTLRDYVLELGHPYLWVQKLGGLHFPKEQPQHTVMADHSQSASHMETTMKLLKT
RVQSRLALHKQFASLEHGIVPVTSECQYLFPAKVVSRLVKWMIMAHEDYMELHFTKDIVE
AGLAGDTNLYYLALIERGTAKLQAAVVLNPGYSSIPPVFRLCLNWKGEKTNSNDDNIRAM
ESEVNVCYRELCGPRPSHQLLTNQLQRLCVLLDVYLETESHDDSVEGPKEFPQEKMCLRL
FRGPSRMKPFKYNHPQGFFSHR
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgtcatcagaatccagcaaaaaaaggaaacccaaagtgatccgaagtgatggaacccca
actgaagggaaacggaatcgatctgacacagagcaggaaggcagatactatagcgaggag
gctgaggttgacctgcgggaccccggcagagactatgagttgtacaagtacacttgccag
gagctacagaggttgatggctgagatccaggacctgaagagcaagggcagcaaggacgtg
gccattgaaatagaagaacgaaggatccagagctgtgtgcatttcatgactctaaagaag
cttaaccgattagcccatatcaggttaaagaaaggaagagatcagacccacgaggccaag
cagaaagtcgatgcctaccacctacagctgcagaacctgctctacgaagtgatgcacctg
cagaaggagatcaccaagtgtctggagttcaagtcaaagcatgaagaaatcgatctggtc
agtttagaggaattttattcagaagctccaccaaacatcagcaaggccgagatcaccatg
ggagaccctcaccaacagacgctggcacgtttggactgggagctggagcagcggaaaagg
ctggcagagaagtaccgagagtgtctgtccaacaaggagaagatcctgaaggagatcgag
gtgaagaaggagtatctcagcagcctccagccccgcctcaacagcatcatgcaggcttcc
ctgccggtgcaagagtacctgttcatgccattcgaccaggctcacaagcagtacgagacc
gccaggcacctgccgcctcccctctacgtgctctttgtgcaggccaccgcatacgggcag
gcctgtgataagacgttgtctgtggcgattgaaggcagtgtggatgaagccaaagccctt
ttcaagccccccgaggactcccaagatgatgagagtgactcggatgctgaagaggagcag
accacgaggcgtcggcccacactcggggttcagttggatgataagcgcaaggagatgctg
aaaaggcacccgctgtctgtcctgctggatctgaagtgcaaagacaacagtgtgctccat
ctgactttcttctatctcatgaacctcaacatcatgacagtgaaagccaaagtgacgacc
gccatggagctgatcacccccatcagtgcaggcgacttactgtctcctgactcggtcttg
agctgcttgtatcctggagatcatggaaagaaaactccaaatccagccaatcagtatcag
tttgataaagttggcatcctgactttgagagactatgtacttgagttaggtcacccctac
ttgtgggtacagaagctgggtggcctccacttccccaaagagcagccccagcacacggtg
atggctgaccactcacagagcgctagccacatggagaccaccatgaaactgctcaagact
agggtacagtcccgcctggctctccacaaacagttcgcatctctggaacatggcattgtg
ccagtcaccagcgagtgccagtacctcttccctgccaaggttgtttcccgactggtaaag
tggatgataatggcccatgaagattacatggagctgcacttcactaaggacattgtagag
gccggcctggctggggacaccaacctctactacctggcgcttatcgaaaggggaacagct
aagcttcaggctgctgtggtactgaaccctggctactcctccatcccacctgttttccga
ctctgtctaaactggaaaggggagaaaaccaacagcaacgatgacaacattcgggctatg
gagagtgaagtcaatgtgtgctatcgggagctctgcggccctcggcccagtcaccagctc
ttgaccaaccagctgcagaggctgtgtgtgctgctggatgtctacctggagaccgagagc
catgatgacagtgtagagggccccaaggaatttccccaggagaagatgtgcctgcggctc
tttaggggtccaagtaggatgaagccgtttaaatataaccaccctcagggattcttcagc
caccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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