KEGG   Rattus norvegicus (rat): 361084
Entry
361084            CDS       T01003                                 
Symbol
Lmo7
Name
(RefSeq) LIM domain only protein 7 isoform 1
  KO
K06084  F-box protein 20
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04520  Adherens junction
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    361084 (Lmo7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    361084 (Lmo7)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     361084 (Lmo7)
SSDB
Motif
Pfam: DUF4757 CH LIM PDZ PDZ_2 DUF6288 PDZ_6
Other DBs
NCBI-GeneID: 361084
NCBI-ProteinID: NP_001001515
RGD: 1302984
Ensembl: ENSRNOG00000060775
UniProt: Q6JBI7
Position
15:84981689..85184554
AA seq 1729 aa
MEGMEDAEADCSVAFAEAQRWVEAVTEKNFETRDFRASLENGVLLCDLINKLKPGVVRKI
NRLSTPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRLKNVLIT
LYWLGRKAQNNPYYHGPYLNLKAFETLLGQALTKALEDSSCLKRSGRDSGYGDIWCPDRG
DFPAPPGSHRREDSFESLDSLGSRSLTSCSSDLTLRGGREGCESDNDWEFTFKMQDYNKD
DMSYRRISAIEPKSALPFNRFLPNKSKQPSYVPAPLRKKRPDKNEDNRRSWASPVYTETE
GTFSSTQRRAWGPKMENWHTVQETSTSSWCLEEEEEKVTRLPNVVKDDLYVRKLSPVMPS
PGSSFDQFLPKGWTPEDMNWKKIKRETYKPWYKEFQGLSQFLLLQALQTYSDDILSSETN
VKLDPTSGPRLITRRKNFSPTPGYRAHDLEPQSLDPDLENDDFFVRKTRAFHANPCVLRA
FEDFRRFSEPDDAVERDIILQCREGELVLPDLEKDDMIVRRIPAQKKEVPLSGAPDRYQP
VPFPEPWTLPPEIQAKFLSVLERTCPPKDKPSSCRVLVPSHRLKKDDMLTRKIQSWKLGT
AVPPISFRPGPCSEADLRKWEAIREASRLRHRKRLMVERLFQKIYGENGSKSLSDVSAED
VQSLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKSYTSDLQKKKEEREEIEKQALE
KSDRSSKTFREMLQDRESQSSTTTSRRRIYSSDDILDDGVLPPTVTLSETSYQSERLEDK
ARAHPAEMPKEDSTTFASREDGIAAEIPLASHIPEERRQAPWPSAETRQASSSSAESHQA
SLPSTESDQARLPSAEPHQASFSSAEPRQVPLVSAEPHQASSFSSTEPHQASLSSALQRP
SSLSSSQQSWSTRGESTRISASLPRSYQRSDTARLTSVVTARPFGTSSRGISSLPRSYTM
DDGWKYNGDVEVVKREQHDSGRAAGMKPDSSHFILGSSSEKEVATGEDVASLSSFVLPSS
SSLSHDQAASSKATFSSTSGLDSVSDSGEGRSSSLREVSRSPDQFSDMRISINQTPGTKH
DFGFTIKWDVSGISVASVEKGSPAEFSQLQVDDEILAINNTKFSYKDTKKWEEAMANAQE
TGNLVMDVRRYGKSGSPETKWIDTTSGIYSTEKSSSLSVTTDFSESLQSPYSESKEINGI
HEESNAFDSKASESISLKNLKRRSQFFEQGSSDSVAPDLPVPTLSAPSRWAWDQEEERRR
QERWQKEQDRLLQEKYQREQEKLREEWQRAQQEAERENSKYLDEELMVLNSNSISLTSRE
SVTASWEPSWSEGSKSLDREGTRAGDEDRGQLEDDAVYEDQSQKLQERLMLEHEKKRKEQ
EAQEEELRKQREAEAQARAEAEAQARAEAQARAEAQAQAEAEARKRAEAQKLQAERERET
SVKIYQYRRPIDSYDLPKREEESSGLLPIDRSKSRSTTELNDPLIEKSGSSKYSDRIGTT
SFSQRSSKKDQGPSEAELERQQILQEMRKKTSLHNDNSWIRQRSASVNKEPICLTGIMRR
GESLDNLDSQRPGSWRQSSWHSQPAGVYASSSVQDFSRLPPQLLSTSNRAYMRNPSSAVP
PLAGSVKTSPGSPSPRSHSPSMSQSGSQLRNRSVSGKRVCSYCNSILGKGAAMIIETLGL
CYHLHCFKCVSCERDLGGSSSGAEVRIRNHQLYCNDCYLRFKSGRPTAM
NT seq 5190 nt   +upstreamnt  +downstreamnt
atggaagggatggaggacgctgaggccgattgctccgttgcattcgcggaggctcagaga
tgggtggaggctgtaactgagaagaattttgaaacaagggattttcgagcctctctggaa
aatggtgttctgttgtgtgatttgattaataagctcaaacccggagtcgttaggaagatc
aatagactgtcgaccccgatagcaggtttggataacataaacgtttttttgaaagcttgt
gaacagattggattgaaagaagcccagctttttcatcccggggatctacaggatttatca
aaccgagtcactgtcaagcaagaagagactgacaggagactgaaaaatgttttgataact
ttatactggctgggaagaaaagcacaaaacaacccctactatcatggtccctatctcaat
ttgaaggcttttgagactcttttaggacaagctttgactaaggcacttgaagattctagc
tgcctgaagagaagtggccgggacagtggctacggggatatctggtgtccggacagagga
gactttcctgcccctcccgggagccacaggagggaagattcctttgaaagcttggactcc
ttggggtctagatcactgaccagctgctcctcagacctcactctcagaggcgggagggaa
ggttgcgaaagtgacaacgattgggaattcaccttcaaaatgcaggattataacaaagat
gacatgtcctaccgacggatttcggccattgaaccgaagtcagctctaccattcaatcgc
ttcttgcctaacaaaagcaagcagccatcctatgtgccagcgcctttgaggaagaagagg
ccagacaaaaatgaggataatagaagaagctgggctagccctgtctacacagaaacagag
ggaacattttcaagtacccagaggagagcttggggtcccaagatggagaactggcacaca
gttcaagaaacttccacctcctcttggtgtttagaagaggaagaagaaaaagtcacacgc
ttgcccaatgttgtgaaggacgatctctatgtgcggaagcttagcccagtcatgcccagc
ccagggagttctttcgatcaattccttcccaaaggctggacccctgaagatatgaactgg
aaaaaaataaaaagagagacttataagccatggtataaggaatttcagggactcagtcag
tttttattgcttcaggccctccaaacctactctgatgatatcttgtcttcggagacaaat
gtcaaactcgatcctacctctggcccgaggctcataactcgcaggaagaacttttctccc
accccaggctaccgagcccacgacctcgagccgcaatccctagatcctgacttagaaaat
gacgatttctttgtcagaaaaacgagggctttccatgccaatccgtgtgttcttcgagcc
ttcgaagactttaggcggttctccgagccggacgatgctgtcgaacgcgatataattttg
cagtgtcgggaaggtgaactcgtacttccggatttagaaaaggatgacatgattgttcgc
aggatcccagctcagaagaaagaagtgcccctttctggggcgccagatagataccagcca
gtccccttccctgaaccgtggactctacctccagaaatccaagcgaaatttctctcggtg
cttgaaaggacatgccctcccaaagacaaaccaagtagctgtagggtgttagtaccttcc
catcgactgaagaaagacgacatgttgactcgcaagatccagtcttggaagctggggact
gctgtgccacccatcagcttcaggcctggcccctgcagcgaggccgacctacggaagtgg
gaggccatccgggaggccagcagacttaggcacaggaagcggctgatggttgagagactc
tttcaaaagatttatggtgagaacgggagcaagtccctgagcgatgtcagcgcagaggat
gttcagagcctgcgtcagctgcgctacgaggagatgcagaaaataaaatcccagttgaag
gagcaagatcagaaatggcaggatgaccttgcgaaatggaaagatcgccggaagagttac
acttcagacctgcagaagaaaaaggaggagagggaagaaattgaaaagcaggcccttgag
aagtctgatcgaagctccaagacattcagggaaatgctgcaggacagggaatctcaaagt
tctacaactacatctagaaggaggatctattcctctgatgacatcctggatgatggcgtg
ctccctcctacagtgactctgtcagaaactagttaccagagcgagaggctagaagacaag
gcaagagctcatcctgctgagatgcccaaggaagattccacaacatttgcaagtagagag
gacggtatagcagccgagatcccgcttgcttctcatattcctgaagagcgacgtcaggcc
ccttggccttctgcagaaacacgccaggcctcttcatcttccgcagaatcgcaccaggcc
tccttgccttccacagaatcagaccaggcccggttgccatctgcagaaccgcaccaggcc
tctttctcttctgcagaacctcgccaggtccctttggtctctgcagaaccacaccaggcc
tcttctttctcctccacagaaccgcaccaggcctctttgtcttctgcactacagcgtcca
tcctcactctcttcttctcagcagtcatggagcacaagaggagagtcaactcggatttca
gcttctctccctagaagttaccagagaagtgatacagccaggctaacatctgtggtcaca
gcgagaccttttggcacatcgtcacggggaatctcatcactgcccagatcctacacgatg
gatgatggctggaaatacaatggagatgttgaagttgtcaagagagagcaacatgattcg
ggcagagccgccggcatgaagcctgactccagccactttattttgggctcatctagtgag
aaggaggtagccacaggagaagatgtggcaagcctgtcctctttcgtactcccttcttcc
tcatctctctcccacgaccaggcagcctcctcaaaagccacattctcatcaacgtctggc
ctggattcagtgtctgactctggagaagggagaagctcatcactgagggaagtttcaagg
tccccggatcagttcagcgatatgagaatcagcataaaccagacgcccgggaccaaacat
gactttggatttacaataaaatgggatgtttctgggatctctgtagcatcagttgaaaaa
ggtagcccagcagaattctctcagctgcaggtagatgatgaaattctcgccatcaataac
accaagttttcatataaggacacaaaaaagtgggaagaagctatggcaaatgcccaagaa
actggaaacttagtgatggatgtcaggcgctacggaaagtccggttcacccgaaacaaag
tggatcgatacaacttcaggaatttacagcacagagaagtcttcaagtctatcagtgaca
actgatttctctgaaagccttcaaagtccttattctgaatccaaagaaatcaatggaatt
catgaggagagcaacgcctttgattcaaaagcatcagaatccatttctttgaaaaattta
aaaaggcgatcacaattttttgaacaaggaagctctgattctgtggctcctgatcttccg
gttccaaccctcagtgccccgagtcgctgggcttgggatcaagaggaggagagacggcgg
caggagcggtggcagaaagagcaagatcgcctactgcaggaaaaataccaacgtgagcag
gagaagctgagggaagagtggcagagagctcagcaggaggcggagagagagaattccaag
tacctggatgaggagctgatggtcctaaattccaacagcatttccctgacctcccgggag
tctgtgactgcctcctgggaacccagctggagtgaagggtccaagtctctggacagggaa
ggcacccgagccggagatgaggaccggggacagctggaagacgatgctgtgtatgaggac
caaagtcagaagctgcaggaaaggctcatgcttgagcatgagaagaaaaggaaggagcaa
gaggctcaggaagaggagctccggaagcagcgggaagctgaggctcaagctcgggctgag
gcagaagcccaggccagggccgaggctcaggcccgggcagaggcccaggcccaggccgag
gctgaggctagaaaacgagctgaagcacagaagctccaggcagagagggaacgagaaact
tcggtcaaaatataccagtaccggaggcctattgattcctatgatctaccaaagagagaa
gaagaatcttcagggctgcttccaattgacaggagtaaatcaagatctactacagagctg
aacgaccccctcatagagaagagtggaagcagcaaatattcagatcgaattgggaccact
agcttttcacaaaggagttctaagaaggatcaaggcccctcggaagcggagttggagaga
cagcaaatccttcaggaaatgaggaagaaaacatctctccacaatgacaacagctggatc
cgacagcgcagtgccagtgtaaacaaggagcccatctgcctgactgggatcatgagaaga
ggggagtctctggacaatctggattcccagcggccaggatcttggaggcagtcctcctgg
cacagccagcctgcaggagtctacgcatcttcctctgttcaagactttagtcgcctgcca
ccacagctgttgtccacgtcaaaccgtgcctacatgcggaacccatcctctgcggtaccg
cctctagctggctcagtgaagacctccccggggtctccctctccacgtagccattctcct
tcgatgtcacagtcaggctctcagctacgtaacaggtcagtgagtgggaaacgtgtgtgc
tcctactgtaatagcattctgggcaaaggagccgccatgatcatcgagaccctgggtctt
tgttatcatttacattgttttaagtgtgtctcctgtgagcgtgacctcggaggctcttcc
tccggagccgaagtcagaatccgaaaccaccaactgtactgcaatgactgctatctccga
ttcaaatctggccggccaaccgccatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (43)   
   UniProt (1)   
   RefSeq(pep) (42)   
DNA sequence (49)   
   RefSeq(nuc) (43)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (109)   

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