KEGG   Rattus norvegicus (rat): 361109
Entry
361109            CDS       T01003                                 
Symbol
Dcp1a
Name
(RefSeq) mRNA-decapping enzyme 1A
  KO
K12610  mRNA-decapping enzyme 1A [EC:3.-.-.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    361109 (Dcp1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    361109 (Dcp1a)
   03036 Chromosome and associated proteins [BR:rno03036]
    361109 (Dcp1a)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     361109 (Dcp1a)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     361109 (Dcp1a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    361109 (Dcp1a)
SSDB
Motif
Pfam: DCP1 mRNA_decap_C WH1
Other DBs
NCBI-GeneID: 361109
NCBI-ProteinID: NP_001178760
RGD: 1561298
Ensembl: ENSRNOG00000016015
UniProt: D4AE80
Position
16:5656960..5702151
AA seq 601 aa
MALSCSPVRPRPRGSAWRSKMELLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCP
KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA
SLSIYSIWFYDKNDCHRIAKLMADVVEEEARRAQQAARDKQSPSQANGCSDQRPIDILEM
LSRAKDEYERNQMGGSNISSPGLQPSSQLSNLGSTETLEETPSGSQDKSAPSGHKHLTVE
ELFGTSLPKEQPAPMGLESEDTDKLLGDAPQKEPSSFLPFPFEQSGGAPQAENLGVHSVT
HHTVQPEVSAPVLITPASIAQSGDKHPPSYTLPLSPVLSPTLPAEAPTTQVPHLPRNSTM
MQAVRTTPRQKSPLLNQPVPELSHSSLIASQSPFRAPVSLANTAGTAIPSSDLLQKLRLT
PQHDQIQAQPLGKGAMAPNFSSAAGQLATPESFIEPSSKTAAARAAVAASLSNMVLAPTL
QSMQQNQDPEVFAQPKVLPSAIPIAGPPLVTATTTAVSSVLLSPSVFQQTVPRSADLERK
ASCPSPLTIGAENQRKPSIILSRSQLQDTLIHLIKNDSGFLSTLHEVYLQVLTKSKDNHS
L
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggcactttcctgttctccagtccgcccccgcccgaggggctcggcctggagatccaag
atggagttgttgagtcgagctgagcaagagatgagtctggcggccttgaaacaacacgac
ccctacatcaccagcatcgcagacctcacgggccaggtcgccttgtacactttctgcccc
aaagccaaccagtgggagaagactgatatagaagggacattatttgtataccgaaggtca
gcttcgccttaccatggctttaccattgtcaaccgactgaacatgcacaatctggttgaa
ccagtgaataaagatttggaatttcagctccatgaaccatttcttctgtatagaaatgca
agtttgtcaatatacagcatctggttctatgacaagaatgactgtcatcgcatagcaaaa
cttatggccgatgtggtggaagaggaggcacgtcgagctcagcaggctgctcgagataaa
cagagtcccagccaggccaacggctgcagtgaccagaggcccatagacatcctggagatg
ctgagcagagccaaggatgagtatgagaggaatcagatgggcggctcaaatatctccagt
ccggggctacagccaagctctcagctctctaatctgggaagcaccgagactctagaagag
acaccctctggatcacaagataagtctgctccatccggtcacaagcatctgacggtggaa
gaattatttggaacctccttgccaaaggagcagccagcacctatgggcctagagtcagaa
gacacggacaagctgctgggagatgcaccacagaaagagcccagctcattcctcccgttt
ccctttgagcagtcagggggagcccctcaggctgaaaacctgggtgtccattctgtcact
caccacacagtccagcctgaagtcagcgcccctgtgctgatcactcccgcctccattgca
cagtcgggcgacaagcatcccccaagctacactctcccactgagccctgtcctcagcccc
actctgccagctgaagctcccaccacacaagttccccacttacctcggaatagcaccatg
atgcaagcagtaaggaccacacctaggcagaaatctccactcctgaaccagcccgtccct
gagctaagccacagcagtctgattgctagccagagccccttcagagccccagtgagcctg
gcaaacacagctggcacggccatcccaagctctgatctgctccagaaactcaggttgacc
ccacagcatgaccaaatacaggcacagccacttggaaaaggtgcgatggcacccaacttt
tcttcggcagctggccagctggccacccctgagagcttcatagagccttcctctaagaca
gcagcagcaagagcagcagtcgcagcctccctgagcaacatggtgcttgctccaaccctc
cagtctatgcagcaaaaccaggatcctgaagtatttgcccagcctaaggtgttacccagt
gccatcccgatcgcaggccctccattggttactgcaacaaccacagcagtatcttcagtc
ctgctgtcccccagtgtgttccagcaaacagttcccaggtctgcagacctagaaaggaaa
gccagctgcccctcccccctcactattggagcagaaaatcagaggaagccttccattatt
ctcagcaggtctcagctccaggacacactgatacatctaataaagaatgactccggcttt
ctcagcacgcttcatgaagtttacttgcaggttctgaccaagagcaaagacaaccacagc
ctatga

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