KEGG   Rattus norvegicus (rat): 361176
Entry
361176            CDS       T01003                                 
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
  KO
K14328  regulator of nonsense transcripts 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    361176 (Upf3a)
   03015 mRNA surveillance pathway
    361176 (Upf3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    361176 (Upf3a)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     361176 (Upf3a)
   mRNA cycle factors
    P-body specific factors
     361176 (Upf3a)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 361176
NCBI-ProteinID: NP_001012159
RGD: 1308778
Ensembl: ENSRNOG00000017397
Vega: OTTRNOG00000001994
UniProt: Q5I0C8
Position
16:complement(82459651..82470686)
AA seq 405 aa
MRSEEGAGGLGAVLSARGPSWREKLSGAETHFRRESTRNESAAPPAPALSESGVGKPREE
KRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSLYPHLYSRAYINFRNPD
DILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLE
SYSLEEEKTSASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLREEKREERRRR
ELEKKRLREEEKRKRREEDRCKRKDAEKQKRAEKDVRIKLLKKLETGEEATTEKHKERGE
AVGAGEEKQEARLVESQPETPGERLQDGSDKEPRDKRFREKEPETPRCHDSCRKHSTHSE
FARFSRRSEEEPKWRKGFTQDGGERGQDGGVPADGRAKQQGAQGV
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgcgctcggaagagggggccggaggcctgggcgcagtcctttctgcgcggggcccgagc
tggagggagaaactgtccggagcagagacccatttccgccgcgagtctacgcggaatgag
tcggcggcgcccccggccccggccttaagtgagagcggggtcggcaagcctcgcgaggag
aagaggacggccctgagcaaggttgtcctccggcgtctgcccccgggcctcaccaaagag
cagctggaagagcaactgcgtcctctacccgcgcacgattacttcgaggtggtggctgcg
gacctcagcctctaccctcacctctactccagagcgtacattaattttaggaaccctgat
gacatcctgctgttcagagaccgttttgatggatacatcttcattggcaataaaggcctg
gagtaccctgcagtggtggagtttgctccattccagaagattgccaaaaagaaggtgaag
aaaaaggatgccaagaccggaagcatcgaagacgacccagagtataaacagttcctggag
tcgtacagcttggaggaagaaaagaccagcgctagtcctgagacactgctgggagagata
gaggcgaagacgagagagttgctggccagaagaaccacacctcttttggaatatattaaa
aacagaaaattagaaaagcagagactccgggaagaaaaacgcgaggagcggaggaggagg
gagctggagaagaagcgtctgcgggaggaagagaagaggaagcggagagaagaggacagg
tgtaaaaggaaagatgcagaaaaacagaagcgagcggagaaggacgtgaggatcaagctt
cttaagaaactggaaacgggagaagaagcgaccactgagaaacacaaagaaagaggtgaa
gccgttggtgctggcgaggagaagcaggaagcccggctggtggagagccagccggagaca
cctggggagaggttacaggacggcagtgataaagaaccaagggacaaaagatttcgagag
aaagagcctgagactccgagatgccatgacagttgcagaaagcacagcactcactcagag
tttgccaggttttccagaaggagcgaggaggagccaaagtggaggaaaggcttcacccag
gacggaggggagaggggccaggacgggggcgtccctgcggatggcagagcaaagcagcaa
ggagcacaaggagtatga

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