KEGG   Rattus norvegicus (rat): 361295
Entry
361295            CDS       T01003                                 
Symbol
Ss18
Name
(RefSeq) protein SSXT
  KO
K15623  protein SSXT
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno05202  Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    361295 (Ss18)
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    361295 (Ss18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    361295 (Ss18)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    361295 (Ss18)
   GBAF(ncBAF) complex
    361295 (Ss18)
SSDB
Motif
Pfam: SSXT
Other DBs
NCBI-GeneID: 361295
NCBI-ProteinID: NP_001094370
RGD: 1311919
Ensembl: ENSRNOG00000016800
UniProt: D4ABC5
Position
18:complement(6047619..6169151)
AA seq 418 aa
MSVAFAAPRQRGKGEITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHTNLVY
LATIADSNQNMQSLLPAPPTQNVPMGPGGMSQSGPPPPPRSHSMPSDGMVGGGPPAPHMQ
NQMNGQMPGPNHMPMQGPGPSQLSMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYSMPPGGAQHYQGQQAPMGLMGQVNQ
GSHMMGQRQMPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
QQPSYPEQGYDRPYEESSPHYCEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPTQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgtctgtggcgttcgcagccccgaggcagcggggcaagggcgagatcacgcccgccgcc
atccagaagatgctggatgaaaataaccaccttattcagtgtataatggactatcaaaat
aaagggaaggcctcggagtgctctcagtaccagcagatactgcatacaaacctggtatac
cttgctaccatagcagactccaatcaaaatatgcagtctctcctaccggcgccgcctaca
cagaatgtgcctatgggtcctggagggatgagtcagagtggccctccaccccctccccgc
tctcacagcatgccttcagatggaatggtgggtgggggccctcctgcaccacacatgcag
aaccagatgaacggccagatgcctgggcctaaccatatgccaatgcagggacctggaccc
agtcagctcagcatgacgaacagctccatgaatatgccttcgagtagccacggctccatg
ggaggctacaaccattctgtgccatcgtcccagagcatgcccgtgcagaaccagatgaca
atgagtcaggggcagccaatgggaaactatggtcccagaccaaacatgaatatgcaacca
aatcaaggtcccatgatgcaccagcagcctccttctcagcagtacagcatgccacctgga
ggtgcgcagcattaccaaggacagcaggcgcccatggggctgatgggtcaagttaaccaa
ggcagtcacatgatgggccagagacagatgcctccctatagacctccacaacagggccca
ccacagcagtactcaggccaggaagactattatggggaccaatacagtcatggtggacaa
ggtcctccagaaggcatgaaccagcaatattaccctgatggtcataatgattacggttat
cagcaaccgtcgtatcctgaacaaggctacgataggccttatgaggagtcctcaccacat
tactgcgaaggaggaaactcgcagtacggccagcagcaggacgcttaccaaggaccacct
ccacagcaaggatacccaccccagcagcagcagtacccggggcagcagggctacccagga
cagcagcagggctacggtcctacccagggcggtccagggcctcagtatcctaattatcct
cagggtcaaggtcagcagtatgggggctatagaccaacacagccaggaccaccacagcca
ccgcagcagaggccttatgggtacgaccagggacaatatggaaattaccagcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

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