KEGG   Rattus norvegicus (rat): 361420
Entry
361420            CDS       T01003                                 
Symbol
Taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C
  KO
K15214  TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    361420 (Taf1c)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase I system
   Basal transcription factors
    SL1/TIF-1B
     361420 (Taf1c)
SSDB
Motif
Pfam: TAF1C_HB TAF1C_beta-prop TAF1C_C PAP1
Other DBs
NCBI-GeneID: 361420
NCBI-ProteinID: NP_001014177
RGD: 1305658
Ensembl: ENSRNOG00000015632
UniProt: Q6P773
Position
19:complement(64561079..64567599)
AA seq 842 aa
MDFPSTLRPSLFMAGPLGMTDGPDLSFMCSWRDALTLPGAQPQNCRDQTSSFAKNLLWEP
STPGPLPLVPPGPDPWDPGLAAQDFLFRGGHYYQYQSRVVLDVTEQLSRFLWDHGDIAFA
PLGKLMLENFRLEGNRGYSKKVTIVSVKRLLQDLGGHQPWGCPWASLSRRLRRFSILGGP
VLSRSVSLLMGRLLHEELATRWEQLLMDEAFTGGALAWLPGRTARAGQLVYPSGGALDKL
YFQEVSVNSGGNPRVLEDPGHIQLRGPVRQVVTSTVQGETLLAVRSDYHCAVWKIDKQEP
PAPLQVLQVEKGATGISLSPHLSGELAICSRSGTVCLWTPQDGLQTIYKDPETLAFRDPS
PWRWADFTAHPRVLTVGDRTGVKMVDIQGPPGCGLLLFCAGAEAACQKGERVLLAQYLGQ
PGPASTSLHLICTQFSIYLMDERLPLVPMLKWDHGLPSAPLLARLLPPASPGYPRPLLLG
GQGGQVQLLHIAGEGTSIPQLAGPPQSLPSITDSLSAFPLLEPKRQQQLQERLEAPVIGL
AAAPPCASAPGLLLFQLSAAGDVFYQHLRIQQTSSLREPDHPAPERPASRAAAPPVDQGS
TPSWTSRASARCSRWLEALMELSPTNPVWAAPTFSHRRFLGHMERQKSQETLAQKLQAAM
AKGQLLRPGDLGTLPKAEPPPAPQCSQQDELTERLTKAWEGQAAAWWKRHQDQTSGSQRQ
SKRPKRRTQLSSTFSSFTSYMDSPDASSAPHSQDLSNSEACPQPPRTPPSQELTQELWAQ
GVQHERRQTLRDYMAKLPLQDNPGPVATPPSQTSSRQTRSFRQQTPVLSGSHPPRKKPRM
GF
NT seq 2529 nt   +upstreamnt  +downstreamnt
atggacttccccagcaccctgcgtccttcgttgtttatggccggtcctcttggcatgact
gatggccccgacttgtccttcatgtgcagctggagagatgcactgaccctgccaggggcc
cagccacagaactgcagggaccagacatcgtcctttgccaagaacctgctgtgggagcca
tcgacaccaggacccctgcccctggtgcctcctggccctgatccctgggaccctggtctg
gcagctcaggacttcctcttccggggaggtcactactaccagtaccagtctcgagttgtg
ctggatgtcactgagcagctcagccgcttcctgtgggaccatggggatatagcctttgca
cccctggggaaactcatgctggagaacttcagattggaggggaaccggggctactcgaaa
aaggtgaccatagtcagcgtgaagaggctgcttcaggacctcggtggacaccagccctgg
gggtgtccctgggcttccctcagccgccggctacgtcgattctctatcctggggggtccc
gtcctaagcaggtccgtgtcattgctcatggggaggttgctgcatgaagagctggccacg
aggtgggagcagttgctgatggatgaggccttcaccgggggtgctttggcctggctgcct
ggaaggacagcacgggccgggcagctggtctaccctagtggaggtgccttggacaagctg
tatttccaggaggtcagtgtgaattcaggtggcaaccctcgggtccttgaggaccctggg
cacatccagctgcggggacctgtacggcaggtggtgactagcactgtccagggagaaacg
cttctggccgtccgctctgactaccactgtgctgtgtggaagattgataagcaggagcca
ccagcacccctgcaggtgctacaggtggagaagggagccactggtattagcctcagccct
cacctgtcaggagagctggccatctgcagccgttctggaactgtgtgtctgtggacccca
caagatggactgcagacaatctacaaggaccctgagacgcttgccttccgtgatccgtct
ccctggcgctgggcagactttactgcccatccccgggtgctgactgtgggggaccgcacg
ggtgtgaaaatggttgatattcagggcccgccgggctgtgggctgctgctgttctgtgct
ggagcagaagctgcctgccagaaaggagaacgggtgttgcttgcccagtacctcgggcag
ccgggtcctgcctctacgtctctacatctcatctgcacccagttctcgatctacctgatg
gatgagcgcctccccctggtgccaatgcttaagtgggaccatggcctgccatctgcaccc
ctgcttgcccgcctgctacccccagctagtcctggctatccccggcccctgctactgggg
ggccagggtggacaggttcagctgcttcacatagcaggagaggggacttccattccccag
ctggcaggacctcctcagtctctgccctccatcaccgactccctctctgcctttcccctg
ctggaacccaagaggcagcagcagctgcaggaacgtctggaggcgccggtcataggtctg
gccgctgccccgccctgtgcctctgcgccaggcctgttgctcttccagctctcagcagct
ggggacgtcttctaccagcacctgcgcatccagcaaacctccagcctcagagagcctgat
cacccagcaccagaacggcctgcatccagggcggcagcacctccagtggaccagggatcc
acaccctcttggacctctcgggccagtgcccgttgcagccgctggttggaggcgctgatg
gagttgtcccccactaatccagtgtgggctgcccccaccttctcccaccgccgttttctg
ggccacatggagcggcagaagagccaggagaccctggcacagaagctccaagcagccatg
gccaaggggcagctcctgcggcctggggacctcggtacactccccaaggcagagccaccc
cctgcaccgcagtgtagccagcaggatgagctcactgagcgcttaaccaaagcctgggaa
ggccaggcagctgcctggtggaaaagacatcaagatcagacctccgggtcccagagacaa
tccaagcggcccaagcgccggactcagctctctagcaccttctcctcgttcacaagctac
atggactccccagatgccagcagtgcccctcacagccaagacctctctaactctgaggcc
tgccctcagccacccaggactccaccctcccaggagttaacgcaggagctgtgggcccaa
ggtgtgcagcatgaacgtcgccagaccctccgggactacatggccaagctgccacttcag
gacaatccaggacctgtggctacaccgccctcccagacctctagccgccagaccaggtct
ttcaggcagcaaacacctgtcctctctggctcccatcctccccggaagaagccacgaatg
ggcttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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