KEGG   Rattus norvegicus (rat): 361436
Entry
361436            CDS       T01003                                 
Symbol
Afg3l1
Name
(RefSeq) AFG3(ATPase family gene 3)-like 1
  KO
K08956  AFG3 family protein [EC:3.4.24.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05017  Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    361436 (Afg3l1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    361436 (Afg3l1)
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:rno03110]
    361436 (Afg3l1)
Peptidases and inhibitors [BR:rno01002]
 Metallo peptidases
  Family M41: FtsH endopeptidase family
   361436 (Afg3l1)
Chaperones and folding catalysts [BR:rno03110]
 Other chaperones and cochaperones
  AAA proteases
   361436 (Afg3l1)
SSDB
Motif
Pfam: Peptidase_M41 AAA AAA_lid_3 FtsH_ext AAA_22 AAA_5 AAA_16 TIP49 AAA_2 RuvB_N nSTAND3 AAA_17 AAA_14 AAA_28 Mg_chelatase AAA_33 IstB_IS21
Other DBs
NCBI-GeneID: 361436
NCBI-ProteinID: NP_001101926
RGD: 1309722
Ensembl: ENSRNOG00000026994
UniProt: B5DEY1
Position
19:68417101..68444260
AA seq 789 aa
MLLRLVGAAGTRALAWPFFKLWQCGGCAGSGGTVWSSVRACGIALQGRLGRCSQQLALQG
RLTSFSPSLYSKPPKGFEKFFKNKKNRKSASPGNSVAPNKEPKNSGPGGDGGHRGGKGDD
FTWWKRMQKGEFPWDDKDFRSLAVLGAGVASGFLYFYFRDPGKEITWKHFVQYYLARGLV
DRLEVVNKQFVRVIPVPGTTSEKFVWFNIGSVDTFERNLESAQWELGVEPTNQVSVVYTT
ESDGSLLRSLVPTLVLVGILLYAMKRGPMGTGRGGRGGGLFSVGETTAKILKNNIDVRFA
DVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAKVP
FITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQE
NTLNQMLVEMDGFNSTTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFK
VHLRPLKLDESLTRDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQA
IERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQY
LPREQYLYTREQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQIVQFGMSE
KLGQVSFDFPRQGETMVEKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGR
RLLEKEVLEKADMIELLGPRPFAEKSTYEEFVEGTGSLEEDTSLPEGLKDWNQGREERGT
EQSLQESPA
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgttactccggctggtgggggcggcgggcactcgggccctggcctggcctttcttcaag
ctgtggcaatgtggcggatgtgcaggaagcggcgggacagtctggagcagcgtgcgggcc
tgtggcattgctctgcagggtcgtctggggagatgctcgcagcagctggctctgcaggga
agactgacttcattttccccgagcctgtactcaaaacctcccaaagggtttgagaagttt
tttaagaataagaagaacagaaaaagtgcaagcccaggaaattcagtagctccaaacaaa
gagccaaagaattctggccctggaggagatggaggccacagaggagggaagggagatgac
ttcacctggtggaaacggatgcagaagggagagtttccttgggacgacaaagacttccgg
agtctggctgttttgggagccggtgtggcctcgggatttttgtatttctatttccgagat
cctggaaaggagatcacctggaaacactttgtgcagtattacctggcccgaggtctggtg
gatcggctggaggttgtgaacaagcagtttgtgcgagtcattccagttcccggtaccaca
tctgagaagttcgtgtggtttaacattggtagtgttgacaccttcgaacggaacctcgag
tccgcccagtgggagctgggcgttgagcccaccaaccaggtctcggtggtttacacaact
gagagcgatggctcccttcttagaagtctcgtgcccactctggtcctggtcggcatcctt
ctctatgctatgaagaggggtccaatggggactggccgcggtgggcgaggaggaggcctc
ttcagtgttggcgagacaacagccaagatcttaaagaacaacatcgatgtgcggtttgca
gatgtggctggctgtgaagaagccaaactggaaattatggagtttgtgaatttcctgaag
aacccaaagcagtatcaggatttaggagccaaaatcccaaagggagcaatgctcactggt
cctcctggtactggcaaaacgcttcttgcaaaggcaactgcgggggaggccaaggtgccc
ttcatcactgtgaatgggtcggagttcctggaaatgttcgttggtgttgggccagcacgg
gttcgtgacatgtttgcgatggcccgaaaacacgctccttgtattttattcattgatgag
attgatgcaattggcaggaagcgaggccgtggccacctgggaggccagagtgagcaggaa
aacacattaaaccagatgcttgtagagatggatgggttcaactctaccactaatgtggta
gtgttagccggcaccaatcgccctgatatccttgacccagccctgacacggcctggccgg
tttgaccgccagatctacatcggcccccctgatatcaaaggcaggtcctctatcttcaag
gtccacttgcgtccactcaagctggatgaaagcctcaccagggacgctctttcgaggaag
ctggcagctctaactccaggcttcactggtgctgacatttccaacgtgtgcaatgaagca
gccctgattgctgcccgtcatctcagcccctctgtccaggagcggcactttgagcaagcc
atcgagagggtcattggaggccttgagaagaagacccaggtcctacaacccagtgaaaag
acaactgtagcctaccacgaggcggggcacgcagtggtgggctggttcttggagcatgca
gaccctctgctgaaggtatccatcatacctcggggtaaggggctgggctacgcgcagtac
cttccccgtgagcagtacctctacacccgcgagcagctcttcgaccgcatgtgcatgatg
ctggggggcagggtggccgagcagctgttctttggtcagatcaccacaggggctcaggat
gatctgaggaaggtcacccagagtgcctatgcccagattgtgcagttcggaatgagtgag
aaactgggccaggtatcctttgacttccccagacaaggcgagaccatggtggagaagccg
tacagtgaggccactgcccagctcattgatgaagaggtgcggtgccttgtcaggtctgcc
tataatcggaccctggagctgcttacacagtgccgggagcaggtggagaaggttggcagg
cgactgctggagaaagaagtgctggagaaagccgacatgatagagctcctgggcccccgg
ccctttgcagagaagtccacctatgaggaatttgtagagggcaccggcagtctagaggag
gacacatcccttcctgaggggctgaaagactggaatcaggggcgggaggaacgaggcact
gagcagagcttgcaggagagccctgcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (35)   

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