KEGG   Rattus norvegicus (rat): 361580
Entry
361580            CDS       T01003                                 
Symbol
Gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno03420  Nucleotide excision repair
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    361580 (Gtf2h1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    361580 (Gtf2h1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    361580 (Gtf2h1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    361580 (Gtf2h1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    361580 (Gtf2h1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     361580 (Gtf2h1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     361580 (Gtf2h1)
SSDB
Motif
Pfam: PH_TFIIH BSD
Other DBs
NCBI-GeneID: 361580
NCBI-ProteinID: NP_001386573
RGD: 1308225
Ensembl: ENSRNOG00000012360
Position
1:106457692..106485729
AA seq 547 aa
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLNVNATESSTSSHKQDVGISAAFLADVRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKMKYAETVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKD
LFAECAKIDEKGLKTMVSLGVKNPMLDLTALEDKPLDEGYGISSVPSTSNSKSIKENSNA
AIIKRFNHHSAMVLAAGLRKQQAQNGQNGEPSSVDGNSGDTDCFQPAVKRAKLQESIEYE
DLGNNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQV
LSSSAASSTITALSPGGALMQGGTQQAVNQMVPNDIQSELKHLYVAVGELLRHFWSCFPV
NTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVTHIEEMLQTAYNKLHSWQS
RRLMKKT
NT seq 1644 nt   +upstreamnt  +downstreamnt
atggcaacttcatcagaagaagtattgctgattgtgaagaaggttcgtcagaagaagcag
gatggagcactatacctcatggcagaaagaattgcttgggcacctgaaggcaaagacaga
tttacaatcagccatatgtatgcagatattaaatgccagaaaataagtccagaaggaaaa
gctaagatacaacttcagctggtcctgcatgcaggggacacaacaaacttccatttttcc
aacgaaagcacagccgtgaaagagcgggatgcagtgaaggacctccttcagcagctgctg
cccaagttcaagcggaaagccaacaaagaactggaggagaagaacagaatgctccaagaa
gatcctgttttattccagctctataaagaccttgttgtgagccaagtgatcagtgctgag
gagttctgggccaaccgtttaaatgtgaatgcaacagagagctctacatccagtcacaag
caggatgttggcatttctgcagcatttctggctgatgtccgtcctcaaacagatggctgt
aatggtctgagatataatttaacttctgatatcattgaatctatatttaggacctatcca
gcagtaaaaatgaaatatgcagaaactgtaccacataacatgacagaaaaggagttctgg
acacgatttttccagtcccattattttcacagggaccgactaaatacaggatcaaaggac
ctctttgcagaatgtgccaaaatagatgaaaagggattaaaaacaatggtttcattagga
gtaaaaaacccaatgctagatttgacagcgttggaagataaaccattagacgagggctat
ggcatttcctccgtgccatctacttccaattccaaatccataaaggagaatagtaatgct
gccatcatcaaaaggtttaaccaccacagtgccatggtcctggctgctggtctcagaaaa
caacaagcacaaaatggacagaatggtgagcccagcagcgtggatggaaattctggagat
acagactgctttcagccagcagtcaagagggcaaagttacaggaatccattgaatatgaa
gacttgggaaacaacaattctgtgaaaacgattgcactgaatctcaagaagtcagacagg
tattatcatggtcctactccaattcagtcactacagtatgcaacaagtcaggacattatt
aattcttttcaaagtattagacaagaaatggaagcttatacacccaagttaactcaggtt
ctctcaagcagcgctgctagtagcaccatcacagccctgtcacctggaggagcacttatg
cagggagggacacagcaagcagtaaaccagatggtgccaaacgatattcagtctgaattg
aaacacttgtatgtggctgttggggagcttctgcggcatttctggtcttgctttcctgtt
aatacaccattcctagaagaaaaggtggtgaaaatgaagagtaatttggaacggttccaa
gttacaaagctctgcccattccaagaaaagatccggaggcagtatttaagcacaaacctg
gtgactcacatagaggagatgctacagacggcctacaacaagctgcactcgtggcaatcc
cggcgcctgatgaagaagacgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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