KEGG   Rattus norvegicus (rat): 361605
Entry
361605            CDS       T01003                                 
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    361605 (Pcf11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    361605 (Pcf11)
   03019 Messenger RNA biogenesis [BR:rno03019]
    361605 (Pcf11)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     361605 (Pcf11)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     361605 (Pcf11)
SSDB
Motif
Pfam: PCF11_RFEG_rpt PCF11_charged Pcf11_helical CID CFIA_Pcf11 SHOCT
Other DBs
NCBI-GeneID: 361605
NCBI-ProteinID: XP_008757879
RGD: 1563397
Ensembl: ENSRNOG00000009891
Position
1:complement(156109724..156136950)
AA seq 1867 aa
MVTNDRTVPYELANENRPSFAQRLGAGGVAKAQSRPGKKAALGRIAEGPGAGPVTRAGQP
IPPGVSNGPAPLPHISPPLVHFARRSGWEHRHFRSWSRHCRRHFVSVEKEAPAAAGSRRR
FPVRLRRFFPEVPPGSSPIPPPRSACGEAAAAGDPGSEAEASEGRRGVERLQLRRRRTSE
GGRGAMSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIV
SLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSL
FKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPST
PGTVVSSPNISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLA
VSLSVQQETANLGPGSAPSKLHVPQIPTMAVKTPHQVPVQPDKSRVGPSLQMQDLKGTNR
DPRLNRMSQHSSHGKEQSHRKEFVMNTINQSDIKTSKTVPSEKLNSSKQEKSKSGERITK
KELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKAEG
KDEDVKEKRKTAEKKDKDEHMKSSEHRLIGSRSKIINGVVQKQDMVTEELEKQGTKPGRS
STRKRSRSRSPKSRSPIVHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMDEF
PPPSREERNIKRSAKQDVRDPRRLKKMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSA
KRWKSGWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKE
LTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPKEENKGG
LKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKS
KHASRNSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQR
SPFNDRFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDG
PTKMIFEGPNKLSPRIDGPPTPGSLRFDGSPGQIGGGGPMRFEGPQGQLGGGCPLRFEGP
PGPVGTPLRFEGPIGQGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQ
PVGGLRFEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFE
GPLLQQGVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGG
MRFEGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERT
GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRIESF
NQTGPYSDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRPSGHY
FDEKNLQSSQFGNFGNLPTPMSVGNIQTSQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFI
QNPSGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAVAQPPPEEEED
QNEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQ
NRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKE
FQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSF
DCTPSPSKTPVENPLNIMLNIVKNELQEPCENPKVKEEQIDAPPACSEESVATPTEIKTE
SDTVESV
NT seq 5604 nt   +upstreamnt  +downstreamnt
atggtaacaaatgaccgaacagtcccttacgaattggccaatgagaaccgaccgtccttt
gcacagcgtctcggagcaggaggtgttgcgaaagcccagtctcggccgggaaagaaggcg
gcgcttggacgtattgcggaagggccgggggcggggcctgtgacacgcgcgggccagcca
atcccgcctggtgtttccaacggccccgcccctttaccgcacatttcccctcccctagtt
catttcgcacgacgcagcggttgggaacacagacattttcggagctggagccgccactgc
cgccgccattttgtgtctgtggagaaagaagccccggcggcggctggaagtagacggaga
ttccccgtgaggctgcggcgtttcttccccgaggttccccctgggtcgtcccccatcccc
cctccgcggtcagcatgtggtgaagccgcagccgccggagacccggggagcgaggccgag
gcgtcggaagggaggcggggtgtcgagcggcttcagcttcggcggcggcggacctcggag
gggggccgcggcgcaatgtcagagcagacgcccgccgaggccggggctgcgggggcccgg
gaggacgcctgtcgggattatcagtcgtcgctggaagacctgaccttcaatagcaaaccg
cacatcaatatgctgaccattctagccgaggagaacctgcccttcgccaaggagatcgtc
tctctcatcgaggcccaaaccgccaaggctccttcctcagagaagcttccagttatgtac
cttatggattctatcgtgaaaaatgttggaagagagtatctcactgcctttactaaaaat
ctagttgcaacatttatttgtgtgtttgaaaaggtggatgaaaatactagaaaaagttta
tttaaattacgttccacatgggatgaaatattccctttgaagaaactttatgccttggat
gtcagagtcaattcattagatcctgcttggcctattaaacctctgcctcctaatgtgaat
acatctagcatccatgtgaatcccaaatttttaaataaatcgcctgatgagccttcaaca
cctggcacagtggtcagttcccctaatatctccactcctcccattgtacctgatatacaa
aagaatctcacccaggaacaactaataaggcaacagttactggcaaaacaaaaacagttg
ctagaacttcagcagaaaaagctggaactggagttagaacaagctaaggcacaactggca
gtatctctgagtgttcagcaggagacagccaacttgggtcctggttcagcaccatctaaa
ttacatgttcctcaaattcccactatggctgttaaaactccccatcaggtccctgtacaa
cctgacaaaagccgagtgggtccctccttacaaatgcaagatttgaaaggaactaaccgg
gatccccgacttaacaggatgagccaacattcttcccatggcaaagagcagagtcatagg
aaagaatttgtaatgaatacaataaaccagtctgatattaaaacaagtaagactgtgccc
tctgaaaaactaaattcatccaagcaagaaaaaagtaaatcaggtgaaagaataaccaag
aaagaacttgaccagttagattctaaatctaaatctaagtctaaatcaccatcacctttg
aaaaacaaattatcccacacaaaagacttgaaaaatcaagaatctgaaagtatgaggttg
tctgatatgaacaagagagatccacgattaaagaagcatcttcaggataaagctgagggc
aaagatgaagatgtaaaagaaaagagaaaaactgcagaaaagaaggataaagatgagcac
atgaaatcatctgaacatagattgattggcagtagaagtaaaatcataaatggcgttgtc
caaaaacaagacatggttacagaagaattggaaaaacaggggacaaaaccagggagatca
agtactagaaagagatcgagatcaaggtcacctaagtctcggtcaccaattgtacattcc
ccaaagagaagagatagacggtcacccaaacgaaggcaaagaagtatgtctcccactttg
gcacccaaagctggaaagatgcgtcagtcaggtcttaaacagtcacatatggacgaattt
ccaccaccttccagggaagaaagaaatattaagagaagtgctaagcaggatgttcgagat
cccagacgactcaaaaagatggatgaggaccggcctcaagaaactgcaggtcaacattct
atgaagtcaggtggtgacccaaaggagaatatagagaattggcaaagctctaagtctgcc
aaaagatggaaatctggttgggaagaaaataaaagcttacaacagggagatgaacatagt
aagcctcctcatctaaggcatagggaaagctggtcaagcactaaaggaatcttgtcacct
cgagctccaaagcagcagcatcgattaagtgtagatgccaatcttcaaattcctaaagaa
ttaactcttgcaagcaaaagagaattacttcaaaagacgagtgaacgtttagcatctggt
gaaattacacaggatgagttccttgttgttgtgcatcaaattcgacagctatttcagtat
caagaaggtaaacatagatgcaatgtacgggatagtcctaaagaagaaaataaaggtgga
ttaaaaaagaaacctctcttatctgatgctgaattaacctactatgaacataaagcaaaa
ctgaaaaggacacaggttcagcattcatttccaagacttgatctcttagatcctgatatt
tttgactaccctttgactgatgccttgttgtctggaatagaatgtgagccatccaaaagt
aaacatgcaagtaggaatagtggagcacagtttgacagaaaagaacaatttagtgaaaga
gcaagacgtctttctcctatatctgggagtcgtacttatgctgagaatctttcaccccat
gagggccggagaagacatgacgagcaagtctctgctaaaggtgtacgagaggagcagaga
tcgccatttaatgatcgttttccacttaagcgacctagatatgaagattcagataaacca
tttgtagatggcccagcatcaagatttgctggccttgatacaaatcagcgacttacagct
ctagctgaagaccgaccgttatttgatggacctggtaggccatctgtgacgagagatggc
ccaaccaagatgatttttgaaggacctaataaattaagccctagaattgatggacctcct
acaccaggttctcttcggtttgatgggtcaccaggacaaattgggggaggaggccctatg
agatttgaaggaccacaaggtcagttaggaggtgggtgtcctttgagatttgaaggccct
ccaggaccagtaggaacacctctgcggtttgaagggccaattggtcaaggaggaggaggt
ggttttcgttttgaaggttcacctagtctgaggtttgagggatctgcaggtggtttacga
tttgaaggaccagggggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaa
cctgtgggtggtctcaggtttgagggacctcatggacagcctgtgggcagtcttagattt
gataatcctcgaggtcagcctgtaggtggactcagatttgaagggggtcatggtccatca
ggggctgcaattaggtttgatgggcctcatggtcagccaggtggtggtatcagatttgag
ggccctttgctacagcaaggagttggaatgaggtttgagggtccccatggtcagtctgta
gctggtctgagatttgaaggacataatcaactaggtgggaaccttaggtttgagggacca
catggtcaaccaggggttgggatcaggtttgaaggacctttagttcaacaaggaggtgga
atgaggtttgagggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaa
ggtggtcctagatttgaaggttgtcactctttaaggtttgatggacagccaggtcagcca
tcacttttgccaagatttgatggattacatggccagccaggtcctagatttgaaagaact
ggtcagccaggtccacagagatttgatgggccacctggacagcaggttcaaccgagattt
gatggtgtacctcaaagatttgatgggccacagcaccagcaagcatcaagatttgatatt
cctcttggtctacaaggaacccgatttgacaatcatccttcacaaaggattgaatctttc
aatcagactggcccatatagtgatccaccgggcaatgcttttaatgttccatctcaagga
ctacagttccaaagacacgaacaaatatttgatacacctcaaggaccaaattttaatgga
ccacatggccctggaaaccagaatttcccaaatcccattaacagaccatccggacactat
tttgatgaaaagaatcttcagagttctcagtttggaaactttggcaatttacctacacca
atgtcagtaggaaatattcagacatctcaacaggttctgactggtgttgctcagccagtt
gcgtttggccaaggacaacagtttttaccagttcatccacagaatcctggagcttttatt
caaaatccttcaggcggtcttcctaaggcctaccctgataatcatctcagtcaggtggat
gtaaacgaattgttttcaaaactgctaaaaacaggaattctcaaattgtcacagcctgac
tcagctacagcacaggtaaatgaggctgttgctcagcctccccctgaggaggaggaggat
cagaatgaagatcaagatgttccagatcttactaatttcacaattgaagaattgaagcaa
cgttatgacagtgtaataaaccggctgtacactgggattcaatgttactcttgtggaatg
aggtttacgacatcccagacagatgtttatgcagatcacttggactggcattatcgacag
aatagaactgagaaagatgttagcagaaaagtcactcacagacgttggtactacagtcta
acagactggatagaatttgaagaaatagctgatctggaggaacgtgcaaaaagccagttt
tttgaaaaggttcatgaagaggttgtccttaaaactcaggaggctgctaaagaaaaggag
ttccaaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagag
caatttgaacagtactgggatgaagaggaggaagaatggcacttaaaaaatgctattaga
gtagacggaaagatttaccatccatcatgttatgaagattatcaaaatacatcttcattt
gattgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaac
attgtcaaaaacgaattacaagaaccctgtgaaaatcccaaagttaaggaagaacaaatt
gatgccccaccagcttgttcagaagaaagtgtagcaacacccactgaaattaaaacagaa
agtgatacagttgagtcagtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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