KEGG   Rattus norvegicus (rat): 361649
Entry
361649            CDS       T01003                                 
Symbol
Atxn2l
Name
(RefSeq) ataxin-2-like protein isoform 1
  KO
K23625  ataxin 2/2L
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05014  Amyotrophic lateral sclerosis
rno05017  Spinocerebellar ataxia
rno05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    361649 (Atxn2l)
   05017 Spinocerebellar ataxia
    361649 (Atxn2l)
   05022 Pathways of neurodegeneration - multiple diseases
    361649 (Atxn2l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    361649 (Atxn2l)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     361649 (Atxn2l)
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2
Other DBs
NCBI-GeneID: 361649
NCBI-ProteinID: NP_001123569
RGD: 1565868
Ensembl: ENSRNOG00000018686
UniProt: B3DMA1
Position
1:complement(190508878..190526263)
AA seq 1072 aa
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLPATAAPPGPPTVVSPCLG
PAAAAGSGLRRGAESILAAPAPQQHQERPGAVAIGSVRGQTTGKGPPQSPVFEGVYNNSR
MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDT
MVFKPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYD
LESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLARE
IESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRG
GVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGGKTL
SSPNNRPSGEASVPPTSAVGRMYPPRSPKSAAPAPVSASCPEPPIGSAVASSASIPVTSS
VVDPGAGSISPASPKLSLAPTDVKELPTKEPSRSLEAQELARIAGKVPGLQNEQKRFQLE
ELRKFGAQFKLQPSSSSETGLDPFPSRILKEEAKGKEKEVDGLLTSDPMGSPVSSKAESI
LDKEDKVPLAAVAGSEGPEQLQPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNA
KEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAV
QAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAAT
PYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQY
PSAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQAGQAPHL
GSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMAHV
TQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPY
IGHPQGEQPGQAPGFPGGADDRIREFSLAGGIWHGRAEGLQVGQDARVLGGD
NT seq 3219 nt   +upstreamnt  +downstreamnt
atgttgaagcctcagccgccacaacagacctcccagccccagcagccgccccccacgcaa
caggccgtggctcgccggcctcccggcgggactagccctcccaacggcggcctcccggga
ccgctgcccgctaccgcggctcccccggggcctcccacagtggtctctccgtgcctgggg
cctgcagccgctgccggcagcgggctccgccgcggagccgaaagcatcttggcggcgcca
gcgccgcagcagcatcaagaacggccaggggcagtggctatcggcagcgtcaggggacag
accaccggaaagggacccccacagtcaccagtgtttgaaggtgtctataacaattccagg
atgctgcatttcctgacagctgtagtgggttctacctgtgatgtaaaagtgaaaaatggc
accacttatgagggcattttcaagacgctgagctcaaagtttgaactggcagtagatgcg
gtacatcggaaagcctctgagccagcaggtgggcctcgtcgggaagacattgtggacacc
atggtgtttaaaccaagtgatgttctgcttgtccacttccgaaatgttgacttcaattat
gctactaaagacaagttcactgactcagccattgccatgaactctaaggtgaatggagaa
cacaaagagaaggtgcttcagcgttgggagggcggtgacagcaacagtgatgactacgat
ctggaatccgatatgtctaatggatgggatcctaatgagatgttcaaatttaatgaggag
aactatggagtgaagaccacctatgacagcagtctatcttcttacacggttcccttagaa
aaggacaactctgaagagtttcggcagcgggagcttcgcgcggcccagttggctcgggag
attgagtctagtccccagtaccgtctacggattgccatggaaaatgacgacgggcgaacc
gaggaggagaagcacagtgcagttcagcggcaggggtccgggcgggagagccccagcttg
gtgtccagggaagggaaatatatccctctgcctcaacgagttcgggaaggtccccgggga
ggagttcgatgcagcagttctcgaggagggcggcctggccttagctctttgccacctcgt
ggccctcaccatcttgacaacagcagtcctggtcctgggtctgaggcacgtggtatcaat
ggaggtccttcccgcatgtcccccaaggcacagcggcctctgagaggtggcaagacctta
tcttcacccaacaataggccttctggagaagcttctgttcctccaacatctgcagtgggc
cggatgtaccctccacggtctcccaagtctgctgcccctgccccagtctcagcttcctgt
cctgagcctcccattggttcagcagtagcatcctctgcctccatccctgtgacatcatca
gttgtggatcctggagcaggctctatttccccagcatctccaaaactctccctggcccct
acagatgtaaaagaactcccaaccaaggagcccagtaggagtttggaagcccaagagctg
gcccgcatagctgggaaagtccctggccttcagaatgaacaaaaacgctttcagttggaa
gaactgaggaaatttggggcccagtttaagcttcaacctagtagctcctctgagacgggc
ctggatccatttccttcccggatcttgaaagaagaggccaaaggaaaggagaaagaagtg
gatggtctattgacttcagatcctatgggatccccagtctcctccaaggcagaatccata
ttggataaggaagacaaagtgcccctggcagcagtagcggggtctgaggggccagaacag
ctccaaccaccttgccccagccaaactggcagtcctccagtgggcctcatcaagggagat
gacaaagaggagggcccggttactgaacaagtaaagaagtctactttgaaccccaatgcc
aaggagttcaatccaacaaagcctctgctgtctgtgaacaaatctaccagtactccaact
tcaccagggccccgtactcattcaacaccttccataccggtgctgacagcaggccagagt
gggctctacagtccccagtacatctcatatatacctcagatccacatgggaccagctgtg
caggcacctcagatgtatccatatcctgtatccaattcggtgcctgggcagcagggcaag
taccggggtgcaaaaggctcacttcccccccagcgctctgaccaacaccaaccagcctca
gcccctccaatgatgcaggctgctgctgctgctgctggcccacccttggtggctgccaca
ccttattcctcctacatcccttacaacccacagcagttcccaggccagcctgccatgatg
cagcccatggcacactacccttcacagccggtgttcgcccctatgcttcaaagtaatcca
cgaatgttgacatcgggaagccatccccaggccatcgtgtcatcctccactcctcagtac
ccttctgcagagcagcctaccccccaagccctttatgccactgttcaccagtcctatcca
caccatgccacgcagctccatggccaccagcctcagccggccaccactcctactgggagc
caaccacaatcccagcatgcggcccccagtcccgttcaggcggggcaggccccacacctg
ggcagtggacaaccacagcagaatctgtaccatccaggggccctaacaggcacgccacct
tctctaccaccgggaccttctgcccagtcccctcaaagcagcttcccccagccagctgct
gtgtatgccatccatccccaccagcagctgccccacggcttcaccaacatggcccatgtt
acccaggcccatgtccaaactggagtcacagcagccccgcccccacaccctggggctccc
cacccgccccaggtgatgctgctgcaccccccccagggccatgggggccccccccaaggc
gcggtgcccccgagtggggtgcctgcactctcagcttccacaccctcaccctacccctac
atcggacacccccaaggtgagcagcctggccaggcgcctggatttccaggaggagccgat
gacaggattcgtgagttctcgttagctgggggaatttggcatggaagagctgaggggctg
caggtggggcaggatgcacgggttctgggtggggattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (26)   
   UniProt (1)   
   RefSeq(pep) (25)   
DNA sequence (27)   
   RefSeq(nuc) (25)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (104)   

Download RDF
DBGET integrated database retrieval system