KEGG   Rattus norvegicus (rat): 361700
Entry
361700            CDS       T01003                                 
Symbol
Kdm2a
Name
(RefSeq) lysine-specific demethylase 2A
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    361700 (Kdm2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    361700 (Kdm2a)
   04121 Ubiquitin system [BR:rno04121]
    361700 (Kdm2a)
   03036 Chromosome and associated proteins [BR:rno03036]
    361700 (Kdm2a)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     361700 (Kdm2a)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    361700 (Kdm2a)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     361700 (Kdm2a)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    361700 (Kdm2a)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     361700 (Kdm2a)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box JmjC Cupin_8 Cupin_1 LRR_4
Other DBs
NCBI-GeneID: 361700
NCBI-ProteinID: NP_001101985
RGD: 1309419
Ensembl: ENSRNOG00000019145
UniProt: D3ZTJ7 A6HYX1
Position
1:complement(211041859..211125749)
AA seq 1161 aa
MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGK
DFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIE
MTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES
QTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHN
LELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFL
HSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLS
MDMELNELESGNGDEEGADKEARRMNSKRSVLTSPVANGVNLDYDGLGKACRSLPNLKKT
LSGDSSSDSSRGSHNGQVWDPQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPT
GIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKP
HTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRM
KQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEG
LLNEELPNCWECPKCYQEDSSEKAQKRKIEESDEEAVQAKVLRPLRSCEEPLTPPPHSPT
SMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNP
SGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRPNPRVLMQHC
PARNPQRGDEEGLGGEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSV
FRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSW
TNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRD
LLTPPTDKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQS
SNLLTAVGSSTRYSLTELNMAGCNKLTDQTLFFLRRIANVTLIDLRGCKQITRKACEHFI
SDLSINSLYCLSDEKLIQKIS
NT seq 3486 nt   +upstreamnt  +downstreamnt
atggaacctgaagaagaaaggattcggtacagccagagattgcgtggtaccatgcgacgt
cgctatgaagatgatggcatttcagatgatgaaattgaagggaaaagaacttttgacttg
gaagagaagctccataccaacaaatataatgccaattttgttacttttatggagggaaaa
gattttaatgtagagtatatccagcggggtggcttgagagaccctctcattttcaagaat
tctgatggacttggaataaagatgccggatccagacttcacagtgaatgatgtcaaaatg
tgtgtggggagtcgtcggatggtggatgtcatggacgtgaacacacagaaggggattgaa
atgaccatggcgcaatggacacgatactatgagactccagaggaagagcgagagaaactc
tataatgttatcagcctagagtttagccacaccaggcttgagaatatggtacagcggcct
tccacggtggatttcattgactgggtagataacatgtggccaaggcacttgaaagaaagt
cagactgaatcaacaaatgccatcttagagatgcagtaccctaaagtgcaaaagtactgt
ctaatgagtgttcgaggctgctatactgacttccatgtggattttggaggtacttctgtt
tggtatcacatccaccaaggtggaaaggtcttctggctcatcccccctacagcccacaac
ctggagctgtacgagaattggctgctatcagggaaacagggagacatctttctgggtgac
cgggtgtcagattgccaacgaattgagctcaagcagggctataccttcgttattccctca
ggttggattcatgctgtgtatactcctacggacacattagtgtttggaggcaattttttg
catagctttaacatccccatgcaattaaagatatatagtattgaagatcgaacacgggtt
ccaaataaattccgttacccattttactatgaaatgtgttggtatgtgttggagcgctat
gtatactgcataaccaaccgatctcacctaactaaggaatttcagaaagaatcccttagc
atggatatggaattaaatgagttggagtctggaaatggtgatgaggaaggggcggacaaa
gaagcccgacgcatgaacagtaagcgatctgtgcttaccagccctgtggctaatggagtc
aacctggattatgatggacttggcaaagcctgccgaagtcttccaaatctgaagaaaact
ctgtctggagactcatcctcagactctagtcggggatcccacaatggccaagtttgggat
ccccaatgtagccctagaaaggataggcaagtgcatctgacccactttgaacttgaaggt
cttcgatgtcttgtagataagttagagtcactgccactgcacaagaagtgtgtccccaca
gggatagaagacgaagatgctctgattgctgatgtaaagattttgctggaagaacttgcc
agtagtgatcccaagttagccctcactggagttcccatagtacagtggccaaaaagggat
aagcttaaatttccgaccaggccaaaggtgagggttcctacaattcccatcacaaagcct
cacaccatgaagccggctccgcgcctaacacctgtaaggcctgctgcagcctcccccatt
gtgtcaggagccaggcggagaagagtgcgctgcaggaaatgcaaagcctgtgtgcaagga
gaatgtggagtctgccactactgcagggacatgaagaaatttggtgggcctggacgcatg
aagcagtcctgtgtcctcagacagtgcttagcacctagactgcctcattcagttacatgt
tctctctgtggagaagtagatcagaatgaagagacacaggactttgaaaagaaactcatg
gaatgctgcatctgcaacgagatagttcatcctggctgcctccagatggatggagagggg
ttgcttaacgaggaattgccaaattgctgggagtgtccaaagtgttatcaggaagacagc
tcggagaaagcccagaagcggaaaatagaagagagtgatgaagaagctgtacaagccaaa
gtcctacggcccctgaggagctgcgaggagcctctcacacccccgcctcactcacctact
tccatgctgcagctcatccacgacccggtttctccccggggtatggtgactcggtcatcc
cctggggctggccccagcgaccaccacagtgccagccgtgatgaacgcttcaaacggcgg
cagttgctgcggctacaagccacagagcgcaccatggtacgggaaaaggagaacaatccc
agcggcaaaaaggagctgtctgaagttgagaaagccaagatccggggatcgtacctcact
gtcacgctacagaggcccaccaaagagctccacgggacatccattgtgcccaagctgcag
gccatcacggcctcctctgccaaccttcgccctaacccccgtgtgctaatgcagcactgc
ccagcccggaacccccagcgtggggatgaggaggggcttgggggagaggaggaggaagag
gaggaggaggaggaagatgacagtgcagaggaggggggtgcagcaaggctgaatggccgg
ggcagttgggctcaggatggagacgaaagctggatgcagcgggaggtctggatgtctgtc
ttccgctacctcagccgcagagaactttgtgaatgtatgcgagtgtgcaagacgtggtat
aaatggtgctgtgacaaacgactttggacaaaaattgacttgagtaggtgtaaggccatc
gtgccccaggctctcagtggcatcatcaagcggcagccagtaagcctggaccttagttgg
actaacatctccaaaaagcagctgacatggctggtcaataggctgccaggattaaaagac
ctcctcctagcaggctgttcctggtctgcagtatctgccctcagcacctccagctgcccc
cttctcaggacccttgatcttcggtgggcagtaggaattaaagaccctcaaattcgggac
ttgctgactccacccacagataagccaggtcaagacaatcgaagcaaactccggaacatg
actgacttccggctggcaggccttgacatcaccgatgccactctccgactcattattcgc
cacatgccccttttgtctcgacttgacctcagtcactgcagccaccttacagatcagtcc
tccaacctgctcactgctgtcgggtcttccactcgatactcccttacagagctcaacatg
gcgggttgcaataaactgacagaccagaccctgttcttcctaaggagaattgctaatgtc
accttgattgaccttcgaggatgcaaacagatcacaagaaaagcctgtgagcacttcatc
tcagacttgtccatcaacagcctctactgcctgtctgatgagaaactgatacagaagatt
agctaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (9)   
   Pfam (9)   
All databases (43)   

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