KEGG   Rattus norvegicus (rat): 361736
Entry
361736            CDS       T01003                                 
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    361736 (Patl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    361736 (Patl1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     361736 (Patl1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     361736 (Patl1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 361736
NCBI-ProteinID: NP_001101990
RGD: 1305514
Ensembl: ENSRNOG00000021052
UniProt: B5DF93
Position
1:218255801..218287662
AA seq 770 aa
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAVMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRPDTTHLHPQ
HRRLLHQRQLQSRNQHRNLNGTGDRGGHRVSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKSSAAEEMQGDGPKKERTKLITPQVARLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALTDERKHKIWSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSATAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLHSSDPTVESTQNNQWTEVMFM
ATQELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGMR
NT seq 2313 nt   +upstreamnt  +downstreamnt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcag
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacatttggatcaggt
gcagttgatgacgattggcaggaagcacatgagcgcctggctgagttggaagagaagtta
cctgtggcagctgatgaacaaacaggcaatggagagagagatgagatggacttgttgggt
gaccatgaggagaatctagcagaaaggctcagcaagatggtgattgaaaatgagctagaa
gatccagctgtcatgagggcagtgcagaccaggccagttttacaacctcaaccaggaagt
ctgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccactgctt
gctcaggaaatgcctacagtgtctgtattagaatatgccttgcctcagaggcccccacag
ggcccagaagatgaccgggacctttctgagcgagctttaccaaggcggtcaacatcacct
atcattggaagtcctcctgttagagctgttcctataggcaccccacctaagcagatggcg
gttcccagcttcaaccaacagattctgtgtccgaagcctgttcatgtccggcccccaatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcctccctcctgggccacccttttcctcctagtgttcctcctgtactcagtcct
ctgcagagagcacagcttctgggaggagcacaactacagcctggacgaatgtctcccagc
cagttcgcacgggtccctggatttgttggtagcccattggctgccatgaatcctaagttg
ctacaagggcgtgttgggcagatgcttcctccagcaccaggcttccgtgccttcttcagt
gctccaccccctgccacgccacctccacagcaacaccctcctggcccaggacctcacctc
cagaacctaagacctcaggccccaatgtttagaccagacacaactcaccttcatccacag
caccggcgcctgctgcaccagaggcagctgcaaagtagaaatcagcatcgaaatctcaat
ggtactggagacagaggaggtcaccgggttagtcatcaagatcatctccggaaggatcca
tatgctaatctaatgttgcagcgggaaaaggattgggtctctaaaatccaaatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaagctg
gagaaatcgtcagctgctgaagaaatgcaaggtgacggccctaagaaggagcgcaccaag
ctcatcacccctcaggtggccagactggagcacgcctacaagcctgtgcagtttgagggc
tctttggggaaacttactgtctctagtgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcggagtgaggatgatgaaacaaaagaaaaacaagttcgggataaaagaaga
aaaacccttgtcataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaggaagagcggcctgccctgacagatgaaagaaagcac
aaaatctggagcatgtatgacaacctgagaggcaaattgcctgggcaagagaggccaagt
gatgaccactttgtacaaatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattctcatggcaactgccaggaacctc
cctttccttatcaagaaggacgcacaagatgaggtgctgccatgcttactgagtcccttc
tctctcctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcaactgcaccagcaccctctaactctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctcttaagccgtggggaagacctacat
agttcagatcctactgtagaatcaacgcaaaataaccagtggacagaggtgatgttcatg
gcaacccaagaacttctacggatcccccaagcagccctggccaagccaatctctataccc
acaaatctagtgtctctcttttctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactgcagctggttcaggggatgcgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (18)   
   RefSeq(nuc) (4)   
   GenBank (7)   
   EMBL (7)   
Protein domain (1)   
   Pfam (1)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system