KEGG   Rattus norvegicus (rat): 361745
Entry
361745            CDS       T01003                                 
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    361745 (Smarca2)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    361745 (Smarca2)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    361745 (Smarca2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    361745 (Smarca2)
   03036 Chromosome and associated proteins [BR:rno03036]
    361745 (Smarca2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     361745 (Smarca2)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     361745 (Smarca2)
  Chromatin remodeling factors
   BAF complex
    361745 (Smarca2)
   PBAF complex
    361745 (Smarca2)
   GBAF(ncBAF) complex
    361745 (Smarca2)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C SnAC Bromodomain HSA BRK QLQ ResIII HDA2-3 DEAD
Other DBs
NCBI-GeneID: 361745
NCBI-ProteinID: NP_001004446
RGD: 1302988
Ensembl: ENSRNOG00000011931
UniProt: Q6DUH4
Position
1:233617277..233784908
AA seq 1597 aa
MATPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMSTM
GSADFPQEGLHQLHKPMDGIHDKGIVEGVHCGSMKGTSMRPPHPGVGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGTLIPGDLQAMNQPDRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGIQQQQQQQQQQQQQQQQQQPQQPQQP
QQQTQAQPQQQQQQQQQPPTLVSYNRPSGPGQELLMTAQNTQRKLSAPAPSGRPSPAPPA
ATQPTATAVPGPSVQEPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQAR
IAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSK
AYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKI
QKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQT
DEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEENAEGGEPALGPDGEPIDESSQMSDL
PVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEEESSR
QETEEKILLDPNSKEVSEKDARQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVE
KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLN
GPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRSGKFNALLTTYEYI
IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWA
LLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE
VESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR
KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC
QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGL
NLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN
VDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLF
MRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRD
VDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPA
EKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNSSGRQLSEVFIQLPSR
KELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSI
VLQSVFKSARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGK
GKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTDDE
NT seq 4794 nt   +upstreamnt  +downstreamnt
atggccacacccacagacccagctgcaatgccccatcctgggccctccccggggcctgga
ccttctcctggaccaattctggggcctagtccaggaccaggaccgtccccaggttctgtg
cacagtatgatggggcccagtcctggacctcccagtgtctcacatcctatgtcgacaatg
ggctcggcagacttcccacaggaaggcttgcaccagctgcataagcccatggatgggata
catgacaaggggattgtagaaggtgtccactgtggatccatgaagggtaccagtatgcgc
ccaccacacccaggagtgggccctccacagagcccaatggatcagcacagtcaaggttat
atgtcaccacatccatctcctttgggagccccagagcatgtctccagccctatatctgga
ggaggcccaaccccaccccagatgccgccgagccagccagggacactcatcccaggagat
ctgcaggccatgaaccagcctgacagaggtccctcgcctttcagtcctgtacagctgcat
cagcttcgagctcagattttagcttacaaaatgttggccaggggccagcccctccctgaa
actctgcagcttgcagtccagggaaaaaggaccttgcctggtatacaacagcaacagcag
cagcagcagcaacaacaacagcagcagcaacaacagcagccccagcagccccagcagcct
cagcagcagacacaggcacagccacagcagcagcaacagcagcagcagcagccgccaact
cttgttagctacaatagaccatctggccctgggcaggagctgctgatgactgctcagaac
acccagcggaagctgtcggcacccgcacccagcggccgaccttcacctgcacctccagcg
gctacccagcccacggccacagcagtgcctgggccctcggtgcaggagcctgccccaggg
cagccatctcccgtcctgcagctgcaacagaagcagagccgcatcagccccatccagaaa
ccgcaaggcctggaccccgtggagatcctgcaggaacgggagtacagacttcaggctcgc
atagctcataggatacaagaactggaaagtctgcctggctccttgccaccagatttacga
accaaagcaaccgtagagctgaaagcacttcgcttgctcaactttcaacgtcagctgaga
caggaggtggtggcctgcatgcgaagggacaccaccctggagacagccctcaactccaag
gcgtacaagcggagtaagcgccaaacccttcgagaggcacgcatgacggagaaactggag
aagcagcagaagatagagcaggagaggaaacgccgccagaagcaccaggaatacctgaac
agtattttgcaacatgcaaaagattttaaggaataccaccggtctgtggctgggaagatc
cagaagctgtccaaagcagtggcgacttggcatgctaacaccgaaagggagcagaagaag
gagacggagcggatcgagaaggagagaatgcgaaggctgatggctgaagatgaagagggc
tacaggaagctcatcgaccaaaagaaagacagacgcctggcctacctattgcagcagact
gatgagtatgtcgccaatctgaccaacctggtttgggagcacaagcaggcccaagcagcc
aaagagaagaagaagaggaggaggaggaggaagaaggccgaagagaatgcagagggaggg
gagcctgccctgggaccagatggagagccaatagacgaaagcagccagatgagcgacctg
cctgtcaaagtgacgcacacggaaactggcaaggtcctctttggaccagaagcacccaaa
gcaagtcagctggacgcctggctggagatgaatcctggttacgaagtggcacccagatcg
gacagtgaagagagtgaatcagactatgaggaagaggatgaagaagaagagtccagtagg
caggaaacagaggagaagatactgctggatccaaacagcaaagaagtttccgaaaaggac
gccaggcagatcattgagactgcgaaacaggatgtggacgacgagtacagcatgcagtac
agtgccagagggtcccagtcctactacacggtggctcacgccatctccgagagggtggag
aagcagtctgccctcctcattaatggcaccctgaagcactaccagctacagggcctggaa
tggatggtttccctgtataataacaatctgaatggaatcttagctgatgaaatggggcca
ggcaagaccatccagaccattgcactcatcacgtatctgatggagcacaaagggctcaat
ggcccctacctcatcatcgtccccctctcgactctgtctaactggacatatgaatttgac
aaatgggctccttctgcggtgaaaatttcctacaagggtacccctgccatgcgacgctcc
cttgttccccagttacggagtggcaaattcaatgccctcctgactacctacgagtacatt
ataaaagacaagcacattcttgcaaagattaggtggaaatacatgatagtggacgaaggt
caccgaatgaagaaccatcactgcaagctgacccaggtcctgaacacacactacgtggcc
cccagaaggatccttctgactgggaccccgctgcagaataagctccccgaactctgggcc
ctcctcaacttcctcctccctacaatcttcaagagttgcagcacatttgagcagtggttt
aatgctccgtttgccatgaccggcgaaagggtggacctgaacgaagaagaaaccattttg
atcatcaggcgtctacacaaggtgttgagaccctttttactgaggaggctgaagaaagag
gttgagtctcagcttccagaaaaggttgagtatgtgatcaagtgtgatatgtccgctctg
cagaagatcctgtaccgtcatatgcaggccaagggcatcctcctcacggacgggtctgag
aaggataagaaggggaaaggaggtgccaagacgcttatgaacactatcatgcagctgcga
aagatatgcaaccacccatatatgtttcagcacattgaggaatcctttgctgaacacctg
ggctattcgaatggggtcatcaatggggccgagctgtatcgggcctcaggaaagtttgag
ctacttgatcgtattctgcccaaattgagagcgactaaccaccgcgtgctgcttttctgc
cagatgacgtcactcatgaccatcatggaggattactttgcttttcggaacttcctttac
ctgcgccttgatggcaccaccaagtctgaagatcgtgctgctttgctgaagaaattcaat
gaacctgggtcccagtatttcattttcttgctgagcacacgagctgggggcctgggctta
aatcttcaggccgcagacactgtggtcatctttgacagcgactggaatcctcatcaggat
ctgcaggcccaagaccgagctcaccgcattggccaacaaaatgaggtccgggtgctgagg
ctttgcaccgtcaacagtgttgaggaaaagattctcgcggctgccaagtacaagctgaat
gtggaccagaaggttattcaggcgggcatgtttgaccagaagtcatccagccatgagcgg
agggcattcctacaggccatcctggagcacgaagaggagaatgaggaagaagatgaggta
ccagacgacgagaccctgaaccagatgattgctcgccgggaagaagagtttgatcttttt
atgcgcatggacatggaccggcggagagaggacgccagaaacccgaagcgcaagcctcgc
ttgatggaggaagatgagctgccctcctggataattaaggatgatgctgaagtggaaagg
ctcacctgcgaagaggaggaggagaagatatttgggaggggctctcgacagcgccgggat
gtggactacagcgatgccctcaccgagaagcagtggctcagggccatcgaagacggaaat
ttggaagaaatggaagaggaggtacggctgaagaagaggaaaagacgaagaaacgtggat
aaagatcccgtgaaggaagatgtggaaaaagcaaagaaaagaagaggccgccccccagct
gagaagttgtcaccaaatccccccaaactgacgaagcagatgaacgccatcattgatact
gtgataaactacaaggacaggtgtaacgtggagaaggtgccctgtaattctcagttggaa
atagaaggaaacagttcagggcgacagctcagtgaagtcttcattcagttaccttccaga
aaagagttaccagaatactatgaattaattaggaagccagtggatttcaaaaagataaag
gaaagaatccgtaatcataagtaccgaagcctgggagacctggagaaagatgtcatgctt
ctctgtcacaatgcacagacattcaacttggaaggatcccagatctacgaagactccatt
gtcctccagtcagtgtttaagagtgctcggcagaaaattgccaaagaagaagagagtgag
gaggaaagcaatgaggaggaggaggaagaggatgaagaggagtcagaggcagaggcaaaa
tctgtgaaggtgaaaatcaaactgaataaaaaggaagagaaaggccgggatacagggaag
ggcaagaaaaggccaaaccgaggcaaagccaaacctgttgtgagcgattttgacagcgat
gaggagcaggatgagaacgaacagtcagaagcaagtgggactgacgacgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (22)   
   UniProt (1)   
   RefSeq(pep) (21)   
DNA sequence (26)   
   RefSeq(nuc) (22)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (71)   

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