KEGG   Rattus norvegicus (rat): 361775
Entry
361775            CDS       T01003                                 
Symbol
Trub1
Name
(RefSeq) pseudouridylate synthase TRUB1
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    361775 (Trub1)
Enzymes [BR:rno01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     361775 (Trub1)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    361775 (Trub1)
 Prokaryotic type
    361775 (Trub1)
SSDB
Motif
Pfam: TruB_N TruB_C_2 Pus10_C
Other DBs
NCBI-GeneID: 361775
NCBI-ProteinID: NP_001012173
RGD: 1308502
Ensembl: ENSRNOG00000017321
UniProt: Q5M934 A6JI44
Position
1:266518510..266559633
AA seq 341 aa
MAAEEAEVVSPLIVDTAPDTSGTAAASLAAAVSAAAAAARTGSQAQVSKAALAAKLMSLS
GVFAVHKPKGPTSAELLNRLKEKLLAEAGLPSPEWNKRQKQTLKVGHGGTLDSAAQGVLV
VGIGRGTKMLTSMLSGSKRYIATGELGKATDTLDSTGKVTEEKPYDKITQEDIEGILQKF
TGNIMQVPPLYSALKKDGQRLSTLMKRGETVEARPARPVTVHSISLLKYQPPFFTLDVEC
GGGFYIRSLVSDIGKELSSCATVLELTRTKQGPFTLAQHALPEDRWTINDIAQSLKRCTS
LLPEELTFKKSKSEPSSDQALSCGYITLRETKREDDTVKTL
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcagctgaggaggccgaggtggtttcacctctgattgtggacacagccccagacact
tcaggaacagccgcggcctcactagccgcagcggtgtctgctgctgcggcagcggctagg
actggatcgcaagcccaggtttccaaggccgctctggctgctaagctcatgtcgctcagc
ggcgtgttcgccgtgcacaagcccaaagggcccacttcagccgagctgctgaaccggctg
aaggagaagctgctggcagaagctggattgccatctccagaatggaacaagaggcaaaag
cagacattgaaagttggacacggagggacactggacagcgcagcgcaaggtgttctggtg
gttgggattggaagaggaacaaaaatgttgaccagtatgttgtcggggtccaagaggtat
atcgccactggagaactggggaaagccacggacacactggattctaccgggaaggtaaca
gaggagaagccatatgataaaataacacaagaagatatcgaaggcattctgcagaagttt
actgggaatataatgcaagtaccccccctctattctgcactgaagaaggatggacagaga
ctctcaacgttaatgaagagaggcgagactgttgaggccaggccagccaggccagtgact
gttcacagcatctccctcctgaagtaccagccaccgttcttcacgctagatgttgaatgt
ggaggaggcttttacatccgaagcttggtcagtgacattggcaaagaactctcttcctgt
gccaccgtgctggagctgacccgcaccaaacaggggccctttacactggcacagcatgcg
ctccccgaagacagatggaccatcaatgacatcgcacagtccctcaagcgctgcacgtcc
cttctgccagaggagctgacgtttaaaaaatccaaatccgagccgtccagtgaccaggcc
ttaagctgtgggtacataactctaagggagacaaagagagaagacgacacagttaagacg
ctttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (11)   
   RefSeq(nuc) (9)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (34)   

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